PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.012G040100.2

Common Name

B456_012G040100, LOC105780324

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Nin-like

Protein Properties

Length: 273aa MW: 30085.6 Da PI: 7.3051

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.012G040100.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	71.2	1.4e-22	15	61	2	48
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRk 48 +++s++d++ +Fslp+ dAA++Lgvc++vLK+iCR++G++RWPhRk Gorai.012G040100.2 15 AQSLSFDDIADFFSLPLDDAASTLGVCTSVLKKICRENGLDRWPHRK 61 5799******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	15.3	1	85	IPR003035	RWP-RK domain
Pfam	PF02042	1.0E-19	18	62	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MSLKHHHNSN SAAAAQSLSF DDIADFFSLP LDDAASTLGV CTSVLKKICR ENGLDRWPHR 60 KFLAGKSVEE IKRHAARERR REIAELSKAH RQSSQPQPQN NEQPKLQGGS ALPNLQQQGI 120 RNIQTAQALN FSHQSLMTGA AMSDEFKFGF PSDGLSFTTN KWWGSSKSDC NEVGDADGAE 180 TEGEDKHQTI EEPDYMANDK PDQNGKIEDG ISPQGSSLLA AIRKRSMEEG REALELGVYK 240 GRGMKRLGSR KASLLLRIFK SSLPDVWIHD PS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012460037.1	0.0	PREDICTED: uncharacterized protein LOC105780324
TrEMBL	A0A0D2TI59	0.0	A0A0D2TI59_GOSRA; Uncharacterized protein
STRING	Gorai.012G040100.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	5e-10	NIN like protein 7

Link Out ? help Back to Top
Phytozome	Gorai.012G040100.2
Entrez Gene	105780324

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]