PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.012G028600.3

Common Name

B456_012G028600

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C3H

Protein Properties

Length: 362aa MW: 39796 Da PI: 8.8986

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.012G028600.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35.9	1.2e-11	53	79	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++ rtG C++G++C+F+H+p Gorai.012G028600.3 53 PGEPDCSYYIRTGLCRFGATCRFNHPP 79 5789*********************97 PP
2	zf-CCCH	39.2	1.2e-12	100	124	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ Gorai.012G028600.3 100 QPECQYYLKTGTCKFGATCKFHHPR 124 799********************96 PP
3	zf-CCCH	36.9	6.1e-12	146	170	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + +C +++rtG+Ck+G++CkF+H++ Gorai.012G028600.3 146 ETECAYYLRTGQCKFGSTCKFHHPQ 170 578********************97 PP
4	zf-CCCH	36.7	7.2e-12	308	331	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +C+f+++tG Ck+G+ C+F+H++ Gorai.012G028600.3 308 LECQFYMKTGDCKFGAVCRFHHPR 331 58********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	2.1E-5	52	79	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.587	52	80	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.3E-8	54	79	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.35E-5	57	80	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	6.6E-4	58	78	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.356	97	125	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	7.7E-6	97	124	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.9E-10	100	124	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.3E-6	101	126	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	5.2E-5	103	124	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.338	143	171	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.6E-5	143	170	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.57E-6	144	171	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	9.4E-10	146	170	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.2E-4	149	169	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.028	304	332	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.3E-4	304	331	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.54E-5	308	333	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.7E-8	308	331	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.1E-4	310	332	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence Send to blast
MEFSFGAGIP MSRTPAAGPE GTSLSPSLNQ DGTWQINLRS SETMEPGPYP ERPGEPDCSY 60 YIRTGLCRFG ATCRFNHPPN RKLAITTARM KGEFPERVGQ PECQYYLKTG TCKFGATCKF 120 HHPRDKAGIA GRVSLNFLGY PLRPNETECA YYLRTGQCKF GSTCKFHHPQ PTNMMVSLRG 180 SPIYPTFPSP TTSGQQSFLG GLTNWSRASF IPSPRWQGPS SYAPLILPQG MVSVPSWNAY 240 GGQLASVSSS ENLQQTNGNN QIYGTSRPNE SASAGSQALF SQFRSGSAPV GFYALQRENV 300 FPERPGELEC QFYMKTGDCK FGAVCRFHHP RERVLPAPDC ILSPIGLPLR PVSYINYHLL 360 S*

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence Send to blast

MEFSFGAGIP MSRTPAAGPE GTSLSPSLNQ DGTWQINLRS SETMEPGPYP ERPGEPDCSY  60
YIRTGLCRFG ATCRFNHPPN RKLAITTARM KGEFPERVGQ PECQYYLKTG TCKFGATCKF  120
HHPRDKAGIA GRVSLNFLGY PLRPNETECA YYLRTGQCKF GSTCKFHHPQ PTNMMVSLRG  180
SPIYPTFPSP TTSGQQSFLG GLTNWSRASF IPSPRWQGPS SYAPLILPQG MVSVPSWNAY  240
GGQLASVSSS ENLQQTNGNN QIYGTSRPNE SASAGSQALF SQFRSGSAPV GFYALQRENV  300
FPERPGELEC QFYMKTGDCK FGAVCRFHHP RERVLPAPDC ILSPIGLPLR PVSYINYHLL  360
S*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012460673.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X1
Swissprot	Q9SWF9	0.0	ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBL	A0A0D2V104	0.0	A0A0D2V104_GOSRA; Uncharacterized protein
STRING	Gorai.012G028600.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	1e-147	zinc finger protein 1

Link Out ? help Back to Top
Phytozome	Gorai.012G028600.3

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]