PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gorai.012G028600.2 | ||||||||
Common Name | B456_012G028600, LOC105780731 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 402aa MW: 44003.7 Da PI: 8.7843 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.7 | 1.4e-11 | 10 | 36 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++ rtG C++G++C+F+H+p Gorai.012G028600.2 10 PGEPDCSYYIRTGLCRFGATCRFNHPP 36 5789*********************97 PP | |||||||
2 | zf-CCCH | 39 | 1.4e-12 | 57 | 81 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ Gorai.012G028600.2 57 QPECQYYLKTGTCKFGATCKFHHPR 81 799********************96 PP | |||||||
3 | zf-CCCH | 36.7 | 7e-12 | 103 | 127 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + +C +++rtG+Ck+G++CkF+H++ Gorai.012G028600.2 103 ETECAYYLRTGQCKFGSTCKFHHPQ 127 578********************97 PP | |||||||
4 | zf-CCCH | 36.5 | 8.2e-12 | 265 | 288 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +C+f+++tG Ck+G+ C+F+H++ Gorai.012G028600.2 265 LECQFYMKTGDCKFGAVCRFHHPR 288 58********************96 PP | |||||||
5 | zf-CCCH | 40.9 | 3.4e-13 | 308 | 334 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF+H++ Gorai.012G028600.2 308 PGEPLCIFYSRYGICKFGPSCKFNHPM 334 589**********************95 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 2.1E-5 | 9 | 36 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.587 | 9 | 37 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.9E-8 | 11 | 36 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.62E-5 | 14 | 37 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.5E-4 | 15 | 35 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.7E-6 | 54 | 81 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.356 | 54 | 82 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.6E-10 | 57 | 81 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.44E-6 | 58 | 83 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.0E-5 | 60 | 81 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.338 | 100 | 128 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.6E-5 | 100 | 127 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.83E-6 | 101 | 128 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-9 | 103 | 127 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.3E-4 | 106 | 126 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.3E-4 | 261 | 288 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.028 | 261 | 289 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.73E-5 | 265 | 290 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.0E-8 | 265 | 288 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.3E-4 | 267 | 289 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.0E-7 | 307 | 334 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.727 | 307 | 335 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.5E-10 | 309 | 334 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.81E-6 | 310 | 334 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.2E-4 | 312 | 332 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 402 aa Download sequence Send to blast |
MEPGPYPERP GEPDCSYYIR TGLCRFGATC RFNHPPNRKL AITTARMKGE FPERVGQPEC 60 QYYLKTGTCK FGATCKFHHP RDKAGIAGRV SLNFLGYPLR PNETECAYYL RTGQCKFGST 120 CKFHHPQPTN MMVSLRGSPI YPTFPSPTTS GQQSFLGGLT NWSRASFIPS PRWQGPSSYA 180 PLILPQGMVS VPSWNAYGGQ LASVSSSENL QQTNGNNQIY GTSRPNESAS AGSQALFSQF 240 RSGSAPVGFY ALQRENVFPE RPGELECQFY MKTGDCKFGA VCRFHHPRER VLPAPDCILS 300 PIGLPLRPGE PLCIFYSRYG ICKFGPSCKF NHPMGVFTFN YSASSPFEAP VHRLLGSSSG 360 SGGINLSSEG LVEAGSTKPR RLSLSENRQL SSSDDSIDTE G* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012460673.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X1 | ||||
Refseq | XP_012460674.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X2 | ||||
Swissprot | Q9SWF9 | 0.0 | ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like | ||||
TrEMBL | A0A0D2THG6 | 0.0 | A0A0D2THG6_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A0D2VUP9 | 0.0 | A0A0D2VUP9_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.012G028600.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-164 | zinc finger protein 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Gorai.012G028600.2 |
Entrez Gene | 105780731 |
Publications ? help Back to Top | |||
---|---|---|---|
|