PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.012G022000.1 | ||||||||
Common Name | B456_012G022000, LOC105780237 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB | ||||||||
Protein Properties | Length: 558aa MW: 61391.6 Da PI: 5.1112 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.2 | 1.7e-17 | 39 | 86 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed +l+d+vk++G g+W+++ ++ g+ R++k+c++rw ++l Gorai.012G022000.1 39 KGPWTSAEDAILIDYVKKHGEGNWNAVQKHSGLFRCGKSCRLRWANHL 86 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 48.2 | 2.4e-15 | 92 | 135 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T eE+ l++++++++G++ W++ a+ ++ gRt++++k++w++ Gorai.012G022000.1 92 KGAFTREEEHLIIELHAKMGNK-WARMAANLP-GRTDNEIKNYWNT 135 799*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.278 | 34 | 86 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.62E-29 | 38 | 133 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.4E-15 | 38 | 88 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-15 | 39 | 86 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-23 | 40 | 93 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.12E-12 | 41 | 86 | No hit | No description |
PROSITE profile | PS51294 | 25.508 | 87 | 141 | IPR017930 | Myb domain |
SMART | SM00717 | 8.7E-15 | 91 | 139 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-14 | 92 | 135 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-24 | 94 | 140 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.79E-10 | 94 | 135 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 558 aa Download sequence Send to blast |
MSHTKNERED RMLSKNQKEL PLIDDGNCGD ADGGALLKKG PWTSAEDAIL IDYVKKHGEG 60 NWNAVQKHSG LFRCGKSCRL RWANHLRPNL KKGAFTREEE HLIIELHAKM GNKWARMAAN 120 LPGRTDNEIK NYWNTRIKRR QRAGLPLYPP EVCLQALKES HRISAVSGGD KGTHDILQNN 180 TYEIPDVIFD SLKANQNVLP YVPELPDISA SSMMMKVLGS SQYSSFMPPA IHRQKRLRES 240 AAFSPGCTAA VKNDCPLFEQ FEDNMFNKAA KPFGQSFPFE PDPLTKKSQS FSAFQGSHAL 300 SHGNFSASEP TLEAVKLELP SLQYPETELE NWGTFSCSSS LLESVDAFIQ SPQTTSAVVL 360 DSHSPRNSGL LDALLHEAKT LSSAKNHASD KTSNSSTPCD IAERSNFNIC ETEWENCGET 420 LSPMCHSATS FFSESISASG SGSSLDEQPP AETFTEPHTK SESSDHVLTP EVEKEAPIWS 480 DGRCPDILLA SNWLEQGSGY DKDETIMIDA IATLLSDDLS SEYTSMLAGT SVSSQAWEPS 540 CCAWNNMPAV CQMSELP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-31 | 37 | 140 | 5 | 107 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ459146 | 1e-46 | AJ459146.1 Gossypium hirsutum partial myb118 gene, clone pGhMYB118. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012459894.1 | 0.0 | PREDICTED: transcription factor GAMYB-like isoform X1 | ||||
Refseq | XP_012459895.1 | 0.0 | PREDICTED: transcription factor GAMYB-like isoform X1 | ||||
Refseq | XP_012459897.1 | 0.0 | PREDICTED: transcription factor GAMYB-like isoform X1 | ||||
TrEMBL | A0A0D2RWG3 | 0.0 | A0A0D2RWG3_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.012G022000.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3802 | 28 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06100.3 | 1e-131 | myb domain protein 33 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.012G022000.1 |
Entrez Gene | 105780237 |
Publications ? help Back to Top | |||
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