PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.012G018400.2 | ||||||||
Common Name | B456_012G018400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | Trihelix | ||||||||
Protein Properties | Length: 350aa MW: 38643.1 Da PI: 10.2957 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 51.5 | 2.6e-16 | 47 | 130 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ v L+ea+++++ +r+klk+++We+v++++ ++ ++++qCk+k+e+++kry+ + +++ + s++p++ +l+ Gorai.012G018400.2 47 EWSEGAVSSLLEAYENKWVLRNRAKLKGHDWEDVARYVsaraNCTKSPKTQTQCKNKIESMKKRYRSESATADG------SSWPLYPRLD 130 5*************************************844444455556679****************99997......4699999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 6.8E-20 | 45 | 130 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 350 aa Download sequence Send to blast |
MEKETNQENP SLLSNNNISI TKEDSSPKKH PGNTAAAGGG DRLKRDEWSE GAVSSLLEAY 60 ENKWVLRNRA KLKGHDWEDV ARYVSARANC TKSPKTQTQC KNKIESMKKR YRSESATADG 120 SSWPLYPRLD LLLRGSTAPP PPPLLPPQLQ PSAVPQAATP ISTNPPLMTL PEPSMMVVLQ 180 QQHPPPPPPH LAPQLPGTTQ NSHGSNGIDR IPKDGAGTKS SGHLSDKIAM ETDSSTPALY 240 SDRERPRSKK AKMKIETMAT MMKKKKKRRK EECEIGGSIQ WLAQVVLKSE QARMETMKEI 300 EKMRVEAEAK RGEMDLKRTE IIANTQLEIA RLFAGSNKGV DSSLRIGRN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 263 | 268 | KKKKRR |
2 | 263 | 269 | KKKKRRK |
3 | 264 | 268 | KKKRR |
4 | 264 | 269 | KKKRRK |
5 | 265 | 269 | KKRRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ527498 | 2e-59 | HQ527498.1 Gossypium herbaceum clone NBRI_C_EYT27PB01AP1QB simple sequence repeat marker, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012459717.1 | 0.0 | PREDICTED: trihelix transcription factor ASIL2 | ||||
TrEMBL | A0A0D2V0H7 | 0.0 | A0A0D2V0H7_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.012G018400.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54390.1 | 1e-102 | sequence-specific DNA binding transcription factors |
Link Out ? help Back to Top | |
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Phytozome | Gorai.012G018400.2 |
Publications ? help Back to Top | |||
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