PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.012G018400.1

Common Name

B456_012G018400, LOC105780128

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Trihelix

Protein Properties

Length: 351aa MW: 38772.2 Da PI: 10.2353

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.012G018400.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	51.5	2.6e-16	47	130	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ v L+ea+++++ +r+klk+++We+v++++ ++ ++++qCk+k+e+++kry+ + +++ + s++p++ +l+ Gorai.012G018400.1 47 EWSEGAVSSLLEAYENKWVLRNRAKLKGHDWEDVARYVsaraNCTKSPKTQTQCKNKIESMKKRYRSESATADG------SSWPLYPRLD 130 5***********************************844444455556679**************99997......4699999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	6.8E-20	45	130	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence Send to blast
MEKETNQENP SLLSNNNISI TKEDSSPKKH PGNTAAAGGG DRLKRDEWSE GAVSSLLEAY 60 ENKWVLRNRA KLKGHDWEDV ARYVSARANC TKSPKTQTQC KNKIESMKKR YRSESATADG 120 SSWPLYPRLD LLLRGSTAPP PPPLLPPQLQ PSAVPQAATP ISTNPPLMTL PEPSMMVVLQ 180 QQHPPPPPPH LAPQLPGTTQ NSHGSNGIDR IPKEDGAGTK SSGHLSDKIA METDSSTPAL 240 YSDRERPRSK KAKMKIETMA TMMKKKKKRR KEECEIGGSI QWLAQVVLKS EQARMETMKE 300 IEKMRVEAEA KRGEMDLKRT EIIANTQLEI ARLFAGSNKG VDSSLRIGRN *

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence Send to blast

MEKETNQENP SLLSNNNISI TKEDSSPKKH PGNTAAAGGG DRLKRDEWSE GAVSSLLEAY  60
ENKWVLRNRA KLKGHDWEDV ARYVSARANC TKSPKTQTQC KNKIESMKKR YRSESATADG  120
SSWPLYPRLD LLLRGSTAPP PPPLLPPQLQ PSAVPQAATP ISTNPPLMTL PEPSMMVVLQ  180
QQHPPPPPPH LAPQLPGTTQ NSHGSNGIDR IPKEDGAGTK SSGHLSDKIA METDSSTPAL  240
YSDRERPRSK KAKMKIETMA TMMKKKKKRR KEECEIGGSI QWLAQVVLKS EQARMETMKE  300
IEKMRVEAEA KRGEMDLKRT EIIANTQLEI ARLFAGSNKG VDSSLRIGRN *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	264	269	KKKKRR
2	264	270	KKKKRRK
3	265	269	KKKRR
4	265	270	KKKRRK
5	266	270	KKRRK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ527498	3e-65	HQ527498.1 Gossypium herbaceum clone NBRI_C_EYT27PB01AP1QB simple sequence repeat marker, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012459717.1	0.0	PREDICTED: trihelix transcription factor ASIL2
TrEMBL	A0A0D2VUE2	0.0	A0A0D2VUE2_GOSRA; Uncharacterized protein
STRING	Gorai.012G018400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9859	25	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54390.1	1e-103	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Gorai.012G018400.1
Entrez Gene	105780128

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]