PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.012G016100.1 | ||||||||
Common Name | B456_012G016100, LOC105780177 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | Nin-like | ||||||||
Protein Properties | Length: 120aa MW: 13212.3 Da PI: 4.3525 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 50.8 | 3.2e-16 | 2 | 37 | 11 | 46 |
RWP-RK 11 skyFslpikdAAkeLgvclTvLKriCRqyGIkRWPh 46 + +Fslp+ dAA++Lgvc++vLK+iCR++G++RW h Gorai.012G016100.1 2 ADFFSLPLDDAASTLGVCTSVLKKICRENGLDRWLH 37 579*******************************65 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 12.252 | 1 | 65 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 1.3E-13 | 3 | 35 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 120 aa Download sequence Send to blast |
MADFFSLPLD DAASTLGVCT SVLKKICREN GLDRWLHCKP DAGLAAAILM QNLSRISMAA 60 TAYSKGELEY AAYLSDQVTY LFDKMEECLG IVLLEALQNG ATVLDLKKLE NLFYYIFDT* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012459805.1 | 5e-83 | PREDICTED: uncharacterized protein LOC105780177 isoform X1 | ||||
Refseq | XP_012459806.1 | 5e-83 | PREDICTED: uncharacterized protein LOC105780177 isoform X1 | ||||
TrEMBL | A0A0D2V0L2 | 1e-81 | A0A0D2V0L2_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.012G016100.1 | 2e-82 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59580.2 | 4e-08 | Nin-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.012G016100.1 |
Entrez Gene | 105780177 |
Publications ? help Back to Top | |||
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