PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.012G015900.1 | ||||||||
Common Name | B456_012G015900, LOC105778739 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | LBD | ||||||||
Protein Properties | Length: 217aa MW: 23578.9 Da PI: 8.7887 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 133.1 | 1.1e-41 | 44 | 143 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vhk+FGasnv+k+l ++pe++r da++slvyeA++r+rdPvyG++g i++lq+q+++l+ Gorai.012G015900.1 44 PCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVPESQRADAANSLVYEANVRLRDPVYGCMGAISALQHQVQSLQ 134 7****************************************************************************************** PP DUF260 92 aelallkee 100 ae++++++e Gorai.012G015900.1 135 AEVHAVRAE 143 ****99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.624 | 43 | 144 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.3E-42 | 44 | 141 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MSGERERFDE IGKKIKREGG VSCHQQMGRR HILSPPGTLN TITPCAACKL LRRRCAQECP 60 FSPYFSPHEP QKFASVHKVF GASNVSKMLM EVPESQRADA ANSLVYEANV RLRDPVYGCM 120 GAISALQHQV QSLQAEVHAV RAELLKYKYR EANFIPSSLV ALLSSGAVSV AAPPPPPQPP 180 PPPLPTTSTS TSSMYTQLTT AADYTTISNE NVSYFG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 5e-47 | 36 | 159 | 3 | 126 | LOB family transfactor Ramosa2.1 |
5ly0_B | 5e-47 | 36 | 159 | 3 | 126 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ525765 | 1e-146 | HQ525765.1 Gossypium herbaceum clone NBRI_D_2250-1 simple sequence repeat marker, mRNA sequence. | |||
GenBank | HQ527996 | 1e-146 | HQ527996.1 Gossypium herbaceum clone NBRI_D_2250-2 simple sequence repeat marker, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012457948.1 | 1e-160 | PREDICTED: LOB domain-containing protein 15-like | ||||
Swissprot | Q8L5T5 | 2e-83 | LBD15_ARATH; LOB domain-containing protein 15 | ||||
TrEMBL | A0A0D2RW35 | 1e-159 | A0A0D2RW35_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.012G015900.1 | 1e-159 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1927 | 27 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40470.1 | 1e-84 | LOB domain-containing protein 15 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.012G015900.1 |
Entrez Gene | 105778739 |
Publications ? help Back to Top | |||
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