PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.012G011800.1
Common NameB456_012G011800, LOC105780660
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family AP2
Protein Properties Length: 585aa    MW: 64561.7 Da    PI: 7.2144
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.012G011800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.11.4e-15262321155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aaka++ a++k++g
  Gorai.012G011800.1 262 SQYRGVTRHRWTGRYEAHLWDnSCRkEGqtRKgRQVYLGGYDKEEKAAKAYDLAALKYWG 321
                         78*******************655454478446*************************98 PP
2AP2483e-15364415155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Gorai.012G011800.1 364 SVYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 415
                         78****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.81E-17262331IPR016177DNA-binding domain
CDDcd000181.32E-20262331No hitNo description
PfamPF008476.8E-12262321IPR001471AP2/ERF domain
PROSITE profilePS5103218.953263329IPR001471AP2/ERF domain
SMARTSM003804.6E-29263335IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-15263330IPR001471AP2/ERF domain
PRINTSPR003671.4E-6264275IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-18364425IPR016177DNA-binding domain
CDDcd000182.94E-24364425No hitNo description
PfamPF008476.0E-10364415IPR001471AP2/ERF domain
PROSITE profilePS5103219.006365423IPR001471AP2/ERF domain
SMARTSM003803.6E-34365429IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-18365423IPR001471AP2/ERF domain
PRINTSPR003671.4E-6405425IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 585 aa     Download sequence    Send to blast
MSNWLGFSLT PDLRIDESFG REDHGGFPSV MPLRSDGSLC VVDPFRRSST AADEDWRYEN  60
GIGAATANEQ GPKLEDFLGC YSNSPSQETK AYCGTHENQN TVPSPTRINV NVAPNYSSSG  120
DADAAENFTN PSSFIQTYRN YNENPQTLMA GGHSLQQCDP NPNHNQRSGV YHVPFESATS  180
VSGFKSWLRQ TPFPGGKASG NETNNNFNFQ ALSLTMSPTS RNGFPATAPL EVVDNRKRPV  240
GRTLTRESVP RKSIDTFGQR TSQYRGVTRH RWTGRYEAHL WDNSCRKEGQ TRKGRQVYLG  300
GYDKEEKAAK AYDLAALKYW GPTTHINFPL STYEKELEEM KNMTRQEFVA HLRRKSSGFS  360
RGASVYRGVT RHHQHGRWQA RIGRVAGNKD LYLGTFSTQE EAAEAYDIAA IKFRGTSAVT  420
NFDISRYDVK RICSSSTLIG GELAKRSPKD TACIAPEDYN SCASSASPQP LLAIPSGEAS  480
DELADMVWTA NSDEQQHQNT NTNNDASLAN SSSRNSSKPQ SPKGSIGLAS DQFGIGGDYS  540
HQGYFSLQGS KYEDGNSETD NSNENRLGNL GLVHKIPMFA LWNE*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, seedlings, inflorescence, and siliques. Also detected at low levels in leaves. {ECO:0000269|PubMed:15988559}.
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012460575.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ1PFE11e-144AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
TrEMBLA0A0D2V0D80.0A0A0D2V0D8_GOSRA; Uncharacterized protein
STRINGGorai.012G011800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM117472532
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-127AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]