PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.012G010900.6
Common NameB456_012G010900
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NF-YA
Protein Properties Length: 307aa    MW: 33530.5 Da    PI: 8.4677
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.012G010900.6genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA98.95.3e-31157213158
           CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                         de++YVNaKQy +Il+RRq Rakle+++kl +k rkpylheSRh hAl+R+Rg+gGrF
  Gorai.012G010900.6 157 DETIYVNAKQYGAILRRRQYRAKLEAQNKL-IKVRKPYLHESRHLHALKRARGNGGRF 213
                         699***************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005216.1E-36155216IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.631156216IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.6E-21159181IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.4E-25159213IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860161181IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.6E-21190213IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MESHVQQSSM SESLNLNMGI VPQHFHNSKQ LSFQFQDQDS SSTQSTGQSY PEAASVGDSN  60
LYRQSSISAS SGGNETPGKL VEHHAKLASS MGTQEYVFSP SQVDYSKSIA HIPLHYAEPY  120
FGGVVTAVCP PQAMIHHPCM LAMLPARVPL PLELTEDETI YVNAKQYGAI LRRRQYRAKL  180
EAQNKLIKVR KPYLHESRHL HALKRARGNG GRFLNTKKLQ ESKPIPTSHG LDASRSPQLH  240
LCANMSNQLE NYKDAASTTT CSDVTSASNS DEMLQQPDFR FSGYSSLIAG ATRGSGGNLH  300
HLSGCG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A6e-19157217262NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:9662544}.
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012460271.10.0PREDICTED: nuclear transcription factor Y subunit A-3 isoform X2
SwissprotQ93ZH28e-77NFYA3_ARATH; Nuclear transcription factor Y subunit A-3
TrEMBLA0A0D2RVQ60.0A0A0D2RVQ6_GOSRA; Uncharacterized protein
STRINGGorai.012G010900.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.11e-71nuclear factor Y, subunit A3
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]