PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.012G010900.1

Common Name

B456_012G010900, LOC105780460

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NF-YA

Protein Properties

Length: 337aa MW: 36918.4 Da PI: 8.5559

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.012G010900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	98.7	6.2e-31	187	243	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 de++YVNaKQy +Il+RRq Rakle+++kl +k rkpylheSRh hAl+R+Rg+gGrF Gorai.012G010900.1 187 DETIYVNAKQYGAILRRRQYRAKLEAQNKL-IKVRKPYLHESRHLHALKRARGNGGRF 243 699*************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	6.1E-36	185	246	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	35.631	186	246	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	3.9E-25	189	243	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	3.1E-21	189	211	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	191	211	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	3.1E-21	220	243	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MQTLHKKDCV LSSHLTCTNV VRCSSWVNSM ESHVQQSSMS ESLNLNMGIV PQHFHNSKQL 60 SFQFQDQDSS STQSTGQSYP EAASVGDSNL YRQSSISASS GGNETPGKLV EHHAKLASSM 120 GTQEYVFSPS QVDYSKSIQA HIPLHYAEPY FGGVVTAVCP PQAMIHHPCM LAMLPARVPL 180 PLELTEDETI YVNAKQYGAI LRRRQYRAKL EAQNKLIKVR KPYLHESRHL HALKRARGNG 240 GRFLNTKKLQ ESKPIPTSHG LDASRSPQLH LCANMSNQLE NYKDAASTTT CSDVTSASNS 300 DEMLQQPDFR FSGYSSLIAG ATRGSGGNLH HLSGCG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	1e-17	187	248	2	63	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012460269.1	0.0	PREDICTED: nuclear transcription factor Y subunit A-3 isoform X1
Refseq	XP_012460270.1	0.0	PREDICTED: nuclear transcription factor Y subunit A-3 isoform X1
TrEMBL	A0A0D2V053	0.0	A0A0D2V053_GOSRA; Uncharacterized protein
STRING	Gorai.012G010900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3349	27	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72830.1	4e-74	nuclear factor Y, subunit A3

Link Out ? help Back to Top
Phytozome	Gorai.012G010900.1
Entrez Gene	105780460

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]