PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.012G009900.6
Common NameB456_012G009900
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 292aa    MW: 32190.7 Da    PI: 8.0583
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.012G009900.6genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.86.6e-12427226
                        -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                        k e Cr+f+r G C+yG+rCkF H+
  Gorai.012G009900.6  4 KKEACRNFQR-GSCQYGERCKFLHV 27
                        889*******.*************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.6E-6228IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.18E-5329IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.779329IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-9427IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.9E-8426IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005635Cellular Componentnuclear envelope
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MHNKKEACRN FQRGSCQYGE RCKFLHVIQQ QPKSNAFGFG TQAISHQQQK PNPFGFGVQN  60
NAQSKGANDF GNKQSQFKNT WTRSSASSGA PSLRQPDNQP QATNHRCNDP ESCKRIIAED  120
FEHERPLWKL TCYSHWKNSP CDIVGDVSYE ELRAAAYDDA KRGLSLQSII ERERNLLNSK  180
LVEFENFLRN PYRGPAGSAA AQQIPFPGAT TIVLSPTTQN TVAPQSNVPP SSPAFLNVSL  240
SNSEAVGREA TNVQLGNNLP TTVASGDSNI WLKEKWTPGE IPEEAPPDAY V*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012460466.11e-174PREDICTED: zinc finger CCCH domain-containing protein 16 isoform X1
RefseqXP_012460467.11e-174PREDICTED: zinc finger CCCH domain-containing protein 16 isoform X2
SwissprotQ9FWS36e-76C3H16_ARATH; Zinc finger CCCH domain-containing protein 16
TrEMBLA0A0D2TGB40.0A0A0D2TGB4_GOSRA; Uncharacterized protein
STRINGGorai.012G009900.11e-173(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.13e-78C3H family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]