PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.012G007100.3

Common Name

B456_012G007100

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 225aa MW: 25907.3 Da PI: 4.4927

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.012G007100.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34.9	3.4e-11	114	156	4	46
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 +k++rrk +NR AA rsR+RKk++++ Le k+ Le+e ++L Gorai.012G007100.3 114 DKKQRRKLRNRDAAVRSRERKKMYVKDLEMKSRYLEGECRRLN 156 79************************************98886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.3E-12	110	174	No hit	No description
SMART	SM00338	7.3E-8	111	175	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.91	113	155	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.2E-9	114	156	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.19E-10	115	172	No hit	No description
CDD	cd14704	4.73E-16	116	167	No hit	No description
PROSITE pattern	PS00036	0	118	133	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MEETNWESLL FEFDFPNLGN ILQNESESVS PPISTHSPDE KPIWTSSIGE IEKLLMEDDR 60 FDDKVETQPI PNEFLADLLV DSSPSGCGDE VIDDTAFDKQ NQTLFNVDND DPIDKKQRRK 120 LRNRDAAVRS RERKKMYVKD LEMKSRYLEG ECRRLNCLLQ WSIAENQALR FTLNQRCAFD 180 ASSAKQESAV LLLGTIRFHK LLIHCIVLYF ILQSEEISVL LLSF*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	117	123	RRKLRNR
2	117	134	RRKLRNRDAAVRSRERKK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012459325.1	1e-137	PREDICTED: bZIP transcription factor 60-like
TrEMBL	A0A0D2UZQ8	1e-163	A0A0D2UZQ8_GOSRA; Uncharacterized protein
STRING	Gorai.012G007100.1	1e-137	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G42990.1	1e-15	basic region/leucine zipper motif 60

Link Out ? help Back to Top
Phytozome	Gorai.012G007100.3

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]