PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G291200.1
Common NameB456_011G291200, LOC105774908
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family G2-like
Protein Properties Length: 319aa    MW: 35880.1 Da    PI: 8.325
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G291200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.42.8e-3273126255
             G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         prlrWtp+LH rFv+ave+LGG+++AtPk +l+lm++kgL+++hvkSHLQ+YR 
  Gorai.011G291200.1  73 PRLRWTPDLHLRFVHAVEKLGGQDRATPKLVLQLMNIKGLSIAHVKSHLQMYRG 126
                         8****************************************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.8E-3069126IPR009057Homeodomain-like
PROSITE profilePS5129413.28569129IPR017930Myb domain
SuperFamilySSF466893.05E-1570125IPR009057Homeodomain-like
TIGRFAMsTIGR015576.7E-2373127IPR006447Myb domain, plants
PfamPF002496.2E-1074125IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MASVDTFEKN RNNNRDLADE EEEEEEEEEE EDRNKINYKT GNEGESSSNS SVEETGKKST  60
TGSVRPYNRS KTPRLRWTPD LHLRFVHAVE KLGGQDRATP KLVLQLMNIK GLSIAHVKSH  120
LQMYRGKKID DPNQVIHKKE IVFQNGDHHH HIHKLSQLPM RQSFNNQSPS STFRYGDVIS  180
WRGNNNKNVL DMTSKGLYCS VATRLFSSCN NYNSLSFSSQ RPTMGTNCTP LKRKMISSMV  240
SNIEDRLDLD LSLKVTTVAG EFDEKGSLAL DDSGGLSLSL ASSSSFSKLC RLNKEVKYGD  300
GNRKQEVRTM ASTLDLTL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A5e-1774125455Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B5e-1774125455Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A4e-1774125354Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-1774125354Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-1774125354Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-1774125354Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A5e-1774125455Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C5e-1774125455Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D5e-1774125455Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F5e-1774125455Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H5e-1774125455Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J5e-1774125455Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012452930.10.0PREDICTED: probable transcription factor KAN4
TrEMBLA0A0D2UZ670.0A0A0D2UZ67_GOSRA; Uncharacterized protein
STRINGGorai.011G291200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36328184
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.11e-47G2-like family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]