PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G289400.1
Common NameB456_011G289400, LOC105776287
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 669aa    MW: 72453 Da    PI: 6.4282
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G289400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH246.7e-08261281526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                         +C+ f++ G C+ Gd C +aHg
  Gorai.011G289400.1 261 PCPEFRK-GACPKGDACEYAHG 281
                         8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484032.18E-1373155IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.209.4E-1574193IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029714.92876156IPR020683Ankyrin repeat-containing domain
SMARTSM002480.2376106IPR002110Ankyrin repeat
CDDcd002043.24E-1380180No hitNo description
PfamPF127961.7E-681154IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0037111143IPR002110Ankyrin repeat
PROSITE profilePS5008811.568111146IPR002110Ankyrin repeat
PROSITE profilePS5010313.638256283IPR000571Zinc finger, CCCH-type
SMARTSM003569.2E-6256282IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-5261281IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.7E-5261282IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.019291315IPR000571Zinc finger, CCCH-type
SMARTSM0035630291314IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 669 aa     Download sequence    Send to blast
MCSGSKSELV PSNFTMEGEL QGCKPDALSK CSVLLELAAS DDLVAFKTEV EEKGLDLGEA  60
SYWYGRRIGS KKMGFEERMP LMIAAMFGSI DVLNYIVGTG KIDVNRACGA DGVTALHCAV  120
AGGASSSVQV IKLLLDASAD ANCVDANGNK PIDLIVPGLK SLSNSKKKVI ELLLKGDDVD  180
GGLNLEEESE KTVLKKEYPV DISLPDINNG IYGTDDFRMY TFKVKPCSRA YSHDWTECPF  240
VHPGENARRR DPRKYPYSCV PCPEFRKGAC PKGDACEYAH GVFESWLHPA QYRTRLCKDE  300
TGCTRKVCFF AHKPDELRPV YASTGSAMPS PRSSAVNAVD MSTLSPLAVG SPSLPLPTAS  360
TPPMSPLTAT SSPKSGGLWQ NKVNLTPPAL QLPGSRLKTA FNARDLDLEM ELLGLENQLQ  420
QQKLIDEISS LSSPSCWSKE YSRLGDMQPT NLDDAFGSLD PSLLSPLHGL SVKSATPTQM  480
QSPTALQIRQ NQLRATYPPN HSSSLVRSPS AYGFDSSAAV AAALMNSRSS TFAKRSQSFI  540
DRGAVTNRAG LTAPANSATM MSSNISDWSS PDGKLDWGIQ GDELNKLRKS ASFGFRNTPT  600
PTPTPTPTPS NINEPDVSWV HSLVKDVTPA SSGLMQQQQQ QYNIAKGVRE RLPPWVEQMY  660
IEQEQMVA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.12620.0flower| flowering
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO488804160.0
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and anthers. {ECO:0000269|PubMed:17609218}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX9637841e-81JX963784.1 Gossypium hirsutum clone NBRI_TRANS-1012 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012454311.10.0PREDICTED: zinc finger CCCH domain-containing protein 29-like
SwissprotQ9XEE60.0C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLA0A0D2TF240.0A0A0D2TF24_GOSRA; Uncharacterized protein
STRINGGorai.011G289400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87726107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.20.0C3H family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]