PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.011G286700.1 | ||||||||
Common Name | B456_011G286700, LOC105775740 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | B3 | ||||||||
Protein Properties | Length: 150aa MW: 16617 Da PI: 7.2913 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 56.9 | 3.7e-18 | 5 | 95 | 1 | 90 |
EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f kvlt+ dv k+ l +p++ ++++ +g ++sk + ++de+g +W++++ y ++ ++ vl++GW++Fv +g+ +gD ++F d + Gorai.011G286700.1 5 FSKVLTNTDVEKR--LAVPNNSLKHFeleNG--NCSKSVEVKDEKGSTWTFRC-YvrsDGAYKKPVLSSGWRQFVVNKGVHQGDLITFCKDVE 92 8899*99999986..9*******77786444..49999***************.52334444459***********************84433 PP SEE CS B3 88 sef 90 e+ Gorai.011G286700.1 93 AEA 95 444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 10.87 | 3 | 105 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 3.01E-16 | 4 | 98 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 9.0E-17 | 4 | 94 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.89E-21 | 4 | 101 | No hit | No description |
SMART | SM01019 | 2.2E-6 | 5 | 105 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.7E-15 | 5 | 98 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 150 aa Download sequence Send to blast |
MTILFSKVLT NTDVEKRLAV PNNSLKHFEL ENGNCSKSVE VKDEKGSTWT FRCYVRSDGA 60 YKKPVLSSGW RQFVVNKGVH QGDLITFCKD VEAEATYKII VQRKIKLLGK EFWCSPEPEQ 120 PTDATAQVIQ APADATGEVI QSLAVLPDV* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012453664.1 | 1e-108 | PREDICTED: B3 domain-containing transcription factor NGA2-like | ||||
TrEMBL | A0A0D2UZ02 | 1e-107 | A0A0D2UZ02_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.011G286700.1 | 1e-108 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16950 | 4 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61970.1 | 6e-12 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.011G286700.1 |
Entrez Gene | 105775740 |
Publications ? help Back to Top | |||
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