PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G271200.2
Common NameB456_011G271200
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HB-other
Protein Properties Length: 272aa    MW: 30740.1 Da    PI: 8.0367
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G271200.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox32.41.6e-101011381954
                         HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         Fe   ++yps +e+  LA+++gL+ +qV++WF N R +
  Gorai.011G271200.2 101 FEHflHPYPSDTEKLMLAQQTGLSRTQVSNWFINARVR 138
                         665559******************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003891.3E-1182146IPR001356Homeobox domain
CDDcd000863.83E-1382143No hitNo description
PROSITE profilePS5007112.11583142IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.9E-2885146IPR009057Homeodomain-like
SuperFamilySSF466891.07E-1885149IPR009057Homeodomain-like
PfamPF059208.8E-1999138IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MLKFVLLLTC IRYIGSTSCI ANKCKQLFHR LNVFPGSETL HRKTVSIVKN GGVDKVNVPS  60
VWTSDQQGIN NQNPIFLHHP LWRSQRGLPD HAVAVLKTWL FEHFLHPYPS DTEKLMLAQQ  120
TGLSRTQVSN WFINARVRLW KPMVEEIHNL ELSQAQIQTQ TTNQDPKLPH FITSQEVENV  180
QTKQPRNKAV YDEETELQKS TSPCIAQIPC NQHNNIGVGG TSGFCLALCL NQNNGVELEQ  240
QPLLPMNLCH NFRLESDGEL SLKPGFDVGR Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A4e-1688146563Homeobox protein Meis2
3k2a_B4e-1688146563Homeobox protein Meis2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012457868.11e-170PREDICTED: BEL1-like homeodomain protein 9
TrEMBLA0A0D2RTL70.0A0A0D2RTL7_GOSRA; Uncharacterized protein
STRINGGorai.011G271200.11e-170(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02030.11e-37TALE family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]