PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G269500.1
Common NameB456_011G269500
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 360aa    MW: 41638.9 Da    PI: 6.6373
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G269500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM146.41.5e-45171461127
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                         lppG+rF+P+deelv++yL+ k++g +l+  + i+e+++y+++P++L +     + ++ ekewyfF++r++ky++g+r+ r++ sgyWkat
  Gorai.011G269500.1  17 LPPGYRFKPRDEELVNYYLRLKISGLPLPP-NRIREANLYRHDPETLTAmnkytSSNEVEKEWYFFTPRERKYTNGSRPARKAGSGYWKAT 106
                         79*************************999.77**************84354433333556****************************** PP

                 NAM  87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                         g dkev+  kg+++g+kktLvfy+g+ p+g kt W+mhey 
  Gorai.011G269500.1 107 GADKEVIL-KGKKIGCKKTLVFYEGKPPRGFKTYWTMHEYV 146
                         ********.9999***************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-5116173IPR003441NAC domain
PROSITE profilePS5100551.41117174IPR003441NAC domain
PfamPF023651.2E-2418146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MLKKQKEEEE EEYFRLLPPG YRFKPRDEEL VNYYLRLKIS GLPLPPNRIR EANLYRHDPE  60
TLTAMNKYTS SNEVEKEWYF FTPRERKYTN GSRPARKAGS GYWKATGADK EVILKGKKIG  120
CKKTLVFYEG KPPRGFKTYW TMHEYVSSEA PVRVRHGKED MKLDNWVLCR LYKNRREAKQ  180
KHRIPQEGNG LECQEKVEPH KMAEPVSEPI NKVAPPVYDQ YQQREVQPFN MNIGQDTNWF  240
PEIDNLMPVS DEYGNYYMFD NNPTHGGGFQ QVPNYDDFVT NAAAAAPAPF SSTFPLDNQF  300
QFMGNAGFNL PPPPLQFQPH WPAPPSPPQQ FSGANTGFDF SVDEYLLDPE FGMSPSEFC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-4751773171Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8472540.0KC847254.1 Gossypium hirsutum NAC domain protein NAC77 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D2VSC00.0A0A0D2VSC0_GOSRA; Uncharacterized protein
STRINGGorai.011G269500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17827310
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77450.13e-53NAC domain containing protein 32
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]