PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.011G267700.1 | ||||||||
Common Name | B456_011G267700, LOC105775903 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | LBD | ||||||||
Protein Properties | Length: 218aa MW: 24150.3 Da PI: 4.4962 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 122.3 | 2.6e-38 | 7 | 106 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C aCk+lrrkC+++Cv+apyf+ ++ +++fa+vhk+FGasn +kll +lp ++r+da+ +++yeA ar+rdP+yG+v++i++lqqq++ l Gorai.011G267700.1 7 SCGACKFLRRKCTNECVFAPYFCYDEaANHFAAVHKVFGASNASKLLLHLPIHNRSDAAITIAYEALARIRDPIYGCVAHIFALQQQVAGL 97 6***********************9878*************************************************************** PP DUF260 91 kaelallke 99 ++e+++l + Gorai.011G267700.1 98 QEEIETLIN 106 ***998765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.045 | 6 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.4E-36 | 7 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MTGLGCSCGA CKFLRRKCTN ECVFAPYFCY DEAANHFAAV HKVFGASNAS KLLLHLPIHN 60 RSDAAITIAY EALARIRDPI YGCVAHIFAL QQQVAGLQEE IETLINQMAN HAVEVPIEAV 120 QFGSIDETMN TLYYQDEQAT LLNLQGSITG NQVVHSQLCE EDSAQHSFKW VEDSKFLSNI 180 HENPYEISFE GLEFGDLIDY PCMGNTGIPS NWEIPIL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-35 | 3 | 112 | 7 | 115 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-35 | 3 | 112 | 7 | 115 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots. {ECO:0000269|PubMed:12068116}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:17259263}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012453851.1 | 1e-163 | PREDICTED: LOB domain-containing protein 33 | ||||
Refseq | XP_016717070.1 | 1e-163 | PREDICTED: LOB domain-containing protein 33-like | ||||
Swissprot | Q9LHS8 | 7e-54 | LBD33_ARATH; LOB domain-containing protein 33 | ||||
TrEMBL | A0A0D2UYI0 | 1e-162 | A0A0D2UYI0_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A1U8LR78 | 1e-162 | A0A1U8LR78_GOSHI; LOB domain-containing protein 33-like | ||||
STRING | Gorai.011G267700.1 | 1e-162 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM108 | 28 | 359 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06080.1 | 3e-56 | LOB domain-containing protein 33 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.011G267700.1 |
Entrez Gene | 105775903 |
Publications ? help Back to Top | |||
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