PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G266200.1
Common NameB456_011G266200, LOC105776666
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 809aa    MW: 90171.7 Da    PI: 5.1006
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G266200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3933.3e-1204348041373
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         l++lL+ cA+av+++d + a++l++++++++sp gd mqR+a+yf  +L+arla+s++++y al +++ts    +++l+a++lf  ++P+ 
  Gorai.011G266200.1 434 LRTLLTLCAQAVAADDRRSANELIKQIRQHSSPMGDGMQRIAHYFIDGLEARLAGSGTQIYTALITKPTS---AADVLKAHHLFLAACPFK 521
                         5789**************************************************************9999...9***************** PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180
                         k+s++  N++I++ +e++ r+HiiDf+i +G+QWp+L++ L+sRp+gpp+lRiTg++ p++g   +e++eetg+rLa++Ae+++vpfef++
  Gorai.011G266200.1 522 KLSNFFSNKTIMNLAENAARLHIIDFGILYGFQWPCLIRRLSSRPGGPPKLRITGIDLPQPGfrPAERVEETGRRLANYAETFKVPFEFHA 612
                         *************************************************************9***************************** PP

                GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                          +a++++++++e+L ++++E+l+Vn++++l +llde+v +es+r++vL+l+++++P+v+++   +  ++++ F +rf eal ++s+lfd+l
  Gorai.011G266200.1 613 -IAQKWDTIQIEDLGIDRDEVLVVNCMYRLRNLLDETVIVESPRNKVLNLIRKMNPDVFILGIVNGAYSAPFFITRFREALFHFSTLFDML 702
                         .7***************************************************************************************** PP

                GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362
                         e+++pre  er+ +Ere++g+e++nv+acegaer+er et+++W++r ++aG++++pl+++++k ak  + + + + + ++e++ +l++gW
  Gorai.011G266200.1 703 ETNVPREIPERMLIEREIFGWEAMNVIACEGAERIERPETYKQWQMRNMRAGLRQLPLNKEIMKIAKERVDTGYHKDFVIDEDNRWLLQGW 793
                         ************************************************************************99888************** PP

                GRAS 363 kdrpLvsvSaW 373
                         k+r ++++S W
  Gorai.011G266200.1 794 KGRIVYALSTW 804
                         *********** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098568.749408785IPR005202Transcription factor GRAS
PfamPF035141.1E-117434804IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 809 aa     Download sequence    Send to blast
MDGWLKGSNS FVDRVGLNDS TVLALSGRDF DNRFKNENCV DIPSSEPVMI PGNSGNMVSS  60
FGTCSDRVGL NDGTVLALSG RDFDSRFKNE NYVDVLPLEH VMVPGNLVPS FGTCSDTVGL  120
NVDSQPVPIP GNSVPSSSVN EGDLHEDFDF SDEVLKYISQ MLMEEDMEDK TCMFKESSAA  180
LQAAEKAFYE VLGERYPPSP EYDADQNQES SDESHGQNCW RCSSASISSG SVVDPGHNHD  240
FGEQRALNFP SQASSSHSSG NSIGSVVDGY ADSPVSTVRL PEIFNNSESA IQFRKGFEEA  300
SKFLPNGGSL FVHGENDGLF LKELKEETKD VAVDKVEKDE ISQDGSRGKK NPYPEDLSLE  360
CGRSSKQSLV YTESAVSPEM FDMVLLNCQS VTELQKVLQD ETSKNVQQNG QLKGSNGGKA  420
RGKKHGGKKN MVDLRTLLTL CAQAVAADDR RSANELIKQI RQHSSPMGDG MQRIAHYFID  480
GLEARLAGSG TQIYTALITK PTSAADVLKA HHLFLAACPF KKLSNFFSNK TIMNLAENAA  540
RLHIIDFGIL YGFQWPCLIR RLSSRPGGPP KLRITGIDLP QPGFRPAERV EETGRRLANY  600
AETFKVPFEF HAIAQKWDTI QIEDLGIDRD EVLVVNCMYR LRNLLDETVI VESPRNKVLN  660
LIRKMNPDVF ILGIVNGAYS APFFITRFRE ALFHFSTLFD MLETNVPREI PERMLIEREI  720
FGWEAMNVIA CEGAERIERP ETYKQWQMRN MRAGLRQLPL NKEIMKIAKE RVDTGYHKDF  780
VIDEDNRWLL QGWKGRIVYA LSTWVPAP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A9e-5144180626380Protein SCARECROW
5b3h_A8e-5144180625379Protein SCARECROW
5b3h_D8e-5144180625379Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in cotyledons, leaves and flowers, and in the elongation zone in root. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012454932.10.0PREDICTED: scarecrow-like protein 9
RefseqXP_012454934.10.0PREDICTED: scarecrow-like protein 9
RefseqXP_012454935.10.0PREDICTED: scarecrow-like protein 9
SwissprotO809330.0SCL9_ARATH; Scarecrow-like protein 9
TrEMBLA0A0D2VS390.0A0A0D2VS39_GOSRA; Uncharacterized protein
STRINGGorai.011G266200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]