PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.011G266200.1 | ||||||||
Common Name | B456_011G266200, LOC105776666 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | GRAS | ||||||||
Protein Properties | Length: 809aa MW: 90171.7 Da PI: 5.1006 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 393 | 3.3e-120 | 434 | 804 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 l++lL+ cA+av+++d + a++l++++++++sp gd mqR+a+yf +L+arla+s++++y al +++ts +++l+a++lf ++P+ Gorai.011G266200.1 434 LRTLLTLCAQAVAADDRRSANELIKQIRQHSSPMGDGMQRIAHYFIDGLEARLAGSGTQIYTALITKPTS---AADVLKAHHLFLAACPFK 521 5789**************************************************************9999...9***************** PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180 k+s++ N++I++ +e++ r+HiiDf+i +G+QWp+L++ L+sRp+gpp+lRiTg++ p++g +e++eetg+rLa++Ae+++vpfef++ Gorai.011G266200.1 522 KLSNFFSNKTIMNLAENAARLHIIDFGILYGFQWPCLIRRLSSRPGGPPKLRITGIDLPQPGfrPAERVEETGRRLANYAETFKVPFEFHA 612 *************************************************************9***************************** PP GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271 +a++++++++e+L ++++E+l+Vn++++l +llde+v +es+r++vL+l+++++P+v+++ + ++++ F +rf eal ++s+lfd+l Gorai.011G266200.1 613 -IAQKWDTIQIEDLGIDRDEVLVVNCMYRLRNLLDETVIVESPRNKVLNLIRKMNPDVFILGIVNGAYSAPFFITRFREALFHFSTLFDML 702 .7***************************************************************************************** PP GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362 e+++pre er+ +Ere++g+e++nv+acegaer+er et+++W++r ++aG++++pl+++++k ak + + + + + ++e++ +l++gW Gorai.011G266200.1 703 ETNVPREIPERMLIEREIFGWEAMNVIACEGAERIERPETYKQWQMRNMRAGLRQLPLNKEIMKIAKERVDTGYHKDFVIDEDNRWLLQGW 793 ************************************************************************99888************** PP GRAS 363 kdrpLvsvSaW 373 k+r ++++S W Gorai.011G266200.1 794 KGRIVYALSTW 804 *********** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 68.749 | 408 | 785 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.1E-117 | 434 | 804 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 809 aa Download sequence Send to blast |
MDGWLKGSNS FVDRVGLNDS TVLALSGRDF DNRFKNENCV DIPSSEPVMI PGNSGNMVSS 60 FGTCSDRVGL NDGTVLALSG RDFDSRFKNE NYVDVLPLEH VMVPGNLVPS FGTCSDTVGL 120 NVDSQPVPIP GNSVPSSSVN EGDLHEDFDF SDEVLKYISQ MLMEEDMEDK TCMFKESSAA 180 LQAAEKAFYE VLGERYPPSP EYDADQNQES SDESHGQNCW RCSSASISSG SVVDPGHNHD 240 FGEQRALNFP SQASSSHSSG NSIGSVVDGY ADSPVSTVRL PEIFNNSESA IQFRKGFEEA 300 SKFLPNGGSL FVHGENDGLF LKELKEETKD VAVDKVEKDE ISQDGSRGKK NPYPEDLSLE 360 CGRSSKQSLV YTESAVSPEM FDMVLLNCQS VTELQKVLQD ETSKNVQQNG QLKGSNGGKA 420 RGKKHGGKKN MVDLRTLLTL CAQAVAADDR RSANELIKQI RQHSSPMGDG MQRIAHYFID 480 GLEARLAGSG TQIYTALITK PTSAADVLKA HHLFLAACPF KKLSNFFSNK TIMNLAENAA 540 RLHIIDFGIL YGFQWPCLIR RLSSRPGGPP KLRITGIDLP QPGFRPAERV EETGRRLANY 600 AETFKVPFEF HAIAQKWDTI QIEDLGIDRD EVLVVNCMYR LRNLLDETVI VESPRNKVLN 660 LIRKMNPDVF ILGIVNGAYS APFFITRFRE ALFHFSTLFD MLETNVPREI PERMLIEREI 720 FGWEAMNVIA CEGAERIERP ETYKQWQMRN MRAGLRQLPL NKEIMKIAKE RVDTGYHKDF 780 VIDEDNRWLL QGWKGRIVYA LSTWVPAP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 9e-51 | 441 | 806 | 26 | 380 | Protein SCARECROW |
5b3h_A | 8e-51 | 441 | 806 | 25 | 379 | Protein SCARECROW |
5b3h_D | 8e-51 | 441 | 806 | 25 | 379 | Protein SCARECROW |
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Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in cotyledons, leaves and flowers, and in the elongation zone in root. {ECO:0000269|PubMed:18500650}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012454932.1 | 0.0 | PREDICTED: scarecrow-like protein 9 | ||||
Refseq | XP_012454934.1 | 0.0 | PREDICTED: scarecrow-like protein 9 | ||||
Refseq | XP_012454935.1 | 0.0 | PREDICTED: scarecrow-like protein 9 | ||||
Swissprot | O80933 | 0.0 | SCL9_ARATH; Scarecrow-like protein 9 | ||||
TrEMBL | A0A0D2VS39 | 0.0 | A0A0D2VS39_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.011G266200.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM358 | 27 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 0.0 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.011G266200.1 |
Entrez Gene | 105776666 |
Publications ? help Back to Top | |||
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