PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.011G257300.2

Common Name

B456_011G257300, LOC105778278

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 337aa MW: 36654.9 Da PI: 9.088

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.011G257300.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.2	4.3e-39	73	133	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e+alkcprC+stntkfCy+nnyslsqPr+fCk+CrryWt+GGalrnvPvGgg+r+nk+s+ Gorai.011G257300.2 73 PESALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSK 133 68899*****************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-32	57	122	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	8.5E-33	75	131	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.609	77	131	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	79	115	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MVFSSVPYLD PPNWQQAPSH HHQQAGVITS ESHHHNSQLP PPPPPLPVPG VGGGGIRPGS 60 MTERARLAKI PQPESALKCP RCESTNTKFC YFNNYSLSQP RHFCKTCRRY WTRGGALRNV 120 PVGGGCRRNK RSKGNNRSKS PSVVTERQHG SSSSSSTLVS NSCTDILTHM NPPAPPQLPL 180 LPPLHHLGNY NSGDIGLNFA GIPPQVAVTG CGTSASDMDF QGSTGLVEQW RSLQQVQQFP 240 FLTSLEQSQT GLYPFESDGV EPPPSYAGHH QFRSKPLESA ITQLANVKME DSQQGLNLSR 300 NFLGISGNDH QYWGTATAGN SWTDLSGFIK EKSSHR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012457412.1	0.0	PREDICTED: dof zinc finger protein DOF3.6-like
TrEMBL	A0A0D2UY21	0.0	A0A0D2UY21_GOSRA; Uncharacterized protein
STRING	Gorai.011G257300.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37590.1	2e-42	DNA binding with one finger 2.4

Link Out ? help Back to Top
Phytozome	Gorai.011G257300.2
Entrez Gene	105778278

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]