PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gorai.011G241700.2 | ||||||||
Common Name | B456_011G241700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | AP2 | ||||||||
Protein Properties | Length: 468aa MW: 51075.4 Da PI: 7.8116 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.4 | 2.6e-16 | 172 | 221 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I++ + k+++lg f+ta Aa+a+++a+ k++g Gorai.011G241700.2 172 SQYRGVTFYRRTGRWESHIWE------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 221 78*******************......55************************997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.37E-15 | 172 | 229 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 6.2E-9 | 172 | 221 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.38E-11 | 173 | 228 | No hit | No description |
SMART | SM00380 | 5.3E-32 | 173 | 235 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.728 | 173 | 229 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.0E-16 | 173 | 229 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.1E-5 | 265 | 313 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 468 aa Download sequence Send to blast |
MLDLNLDIVS SESSCDENIN NNNNNNNVLV NGGAVTLTQM EDSGSTKSSI INDEDFPSNA 60 AVRDENSSDD ASATFVFDIL KKETGDKTTN NFNTIVKKVE NPSPDFVTRQ LFPVTGEKFG 120 GLELEFGSTK PLARPQWLNL SYAESTGEAE LTTFQIKPQP RKSRRGPRSR SSQYRGVTFY 180 RRTGRWESHI WECGKQVYLG GFDTAHAAAR AYDRAAIKFR GVDADINFTL CDYEEDMKQM 240 KHMSKEEFVH ALRRQSNGFS RGSSKNRGVA LHKCGRLEAR MGQFLGKKAY DMAAMKCSGS 300 EAVTNFEPST YEGGGNGHYN LDLSLGISAT RNGSNDTGDF SFRNPTGTGE SSGSVSVGVQ 360 PEHCQTIASK HPPMLSNVYP AALLPYNEKR AEAISSNWAW QMQGTGKIIT PTPVFPIAAS 420 SGFSSSIAIA SSSSSPSPAF NNSGRNPCFP ARATSTNNTS HYYNYRS* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | JX590337 | 3e-84 | JX590337.1 Gossypium hirsutum clone NBRI_GE25232 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012456046.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X3 | ||||
Swissprot | Q9SK03 | 7e-90 | RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7 | ||||
TrEMBL | A0A0D2UXK3 | 0.0 | A0A0D2UXK3_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.011G241700.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G28550.1 | 9e-77 | related to AP2.7 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Gorai.011G241700.2 |
Publications ? help Back to Top | |||
---|---|---|---|
|