PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G241700.1
Common NameB456_011G241700, LOC105777358
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family AP2
Protein Properties Length: 473aa    MW: 51601 Da    PI: 8.0573
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G241700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.42.7e-16172221155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV++++++grW+++I++      + k+++lg f+ta  Aa+a+++a+ k++g
  Gorai.011G241700.1 172 SQYRGVTFYRRTGRWESHIWE------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 221
                         78*******************......55************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.37E-15172229IPR016177DNA-binding domain
PfamPF008476.3E-9172221IPR001471AP2/ERF domain
CDDcd000182.45E-11173228No hitNo description
Gene3DG3DSA:3.30.730.101.0E-16173229IPR001471AP2/ERF domain
SMARTSM003805.3E-32173235IPR001471AP2/ERF domain
PROSITE profilePS5103217.728173229IPR001471AP2/ERF domain
SMARTSM003806.1E-5265313IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MLDLNLDIVS SESSCDENIN NNNNNNNVLV NGGAVTLTQM EDSGSTKSSI INDEDFPSNA  60
AVRDENSSDD ASATFVFDIL KKETGDKTTN NFNTIVKKVE NPSPDFVTRQ LFPVTGEKFG  120
GLELEFGSTK PLARPQWLNL SYAESTGEAE LTTFQIKPQP RKSRRGPRSR SSQYRGVTFY  180
RRTGRWESHI WECGKQVYLG GFDTAHAAAR AYDRAAIKFR GVDADINFTL CDYEEDMKQM  240
KHMSKEEFVH ALRRQSNGFS RGSSKNRGVA LHKCGRLEAR MGQFLGKKAY DMAAMKCSGS  300
EAVTNFEPST YEGGGNGHYN LDLSLGISAT RNGSNDTGDF SFRNPTGTGE SSGSVSVGVQ  360
PEHCQTIASK HPPMLSNVYP AALLPYNEGR AIQKRAEAIS SNWAWQMQGT GKIITPTPVF  420
PIAASSGFSS SIAIASSSSS PSPAFNNSGR NPCFPARATS TNNTSHYYNY RS*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5903373e-84JX590337.1 Gossypium hirsutum clone NBRI_GE25232 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012456046.10.0PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X3
SwissprotQ9SK035e-93RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A0D2VR940.0A0A0D2VR94_GOSRA; Uncharacterized protein
STRINGGorai.011G241700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM164641011
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.17e-80related to AP2.7
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]