PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.011G241600.3

Common Name

B456_011G241600, LOC105777359

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NF-YB

Protein Properties

Length: 190aa MW: 20929.7 Da PI: 7.0442

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.011G241600.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	183.7	1.4e-57	41	137	1	97
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyr 91 vreqdr+lPian+srimk++lP+n+ki+kdaketvqecvsefisf+tseasdkcq+ekrktingddllwa+atlGfedy+eplk+yl++yr Gorai.011G241600.3 41 VREQDRYLPIANISRIMKRALPTNGKIAKDAKETVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIEPLKIYLARYR 131 69*************************************************************************************** PP NF-YB 92 elegek 97 eleg+ Gorai.011G241600.3 132 ELEGDA 137 *996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	4.6E-54	37	140	IPR009072	Histone-fold
SuperFamily	SSF47113	6.83E-40	44	140	IPR009072	Histone-fold
Pfam	PF00808	5.4E-28	47	111	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	4.0E-21	75	93	No hit	No description
PROSITE pattern	PS00685	0	78	94	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	4.0E-21	94	112	No hit	No description
PRINTS	PR00615	4.0E-21	113	131	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence Send to blast
MHFGDLRSFK DMADGMARGP TSPAGGSHES GGEQCSSHST VREQDRYLPI ANISRIMKRA 60 LPTNGKIAKD AKETVQECVS EFISFITSEA SDKCQKEKRK TINGDDLLWA MATLGFEDYI 120 EPLKIYLARY RELEGDAKGS VRGEVPLKRD AVRVLSVPNP QFPIQGSLNY INSQAQGHHM 180 IVPSMQGNE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_B	7e-48	40	132	2	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A	7e-48	40	132	2	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in flowers and mature rosettes. {ECO:0000269\|PubMed:11250072}.

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012456052.1	1e-141	PREDICTED: nuclear transcription factor Y subunit B-1-like isoform X5
Swissprot	Q8VYK4	8e-75	NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBL	A0A0D2VR89	1e-140	A0A0D2VR89_GOSRA; Uncharacterized protein
STRING	Gorai.011G241600.1	1e-137	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37060.3	3e-77	nuclear factor Y, subunit B8

Link Out ? help Back to Top
Phytozome	Gorai.011G241600.3
Entrez Gene	105777359

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]