PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.011G240800.2

Common Name

B456_011G240800, LOC105776280

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB

Protein Properties

Length: 1721aa MW: 188018 Da PI: 6.2216

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.011G240800.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.1	1.7e-07	812	853	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT +E e++ + +G++ +++Ia+ + ++t +c+++++k Gorai.011G240800.2 812 PWTSQEKEIFMAKLAAFGKD-FRKIASFLD-HKTTADCVEFYYK 853 8***************99.*****.*********98 PP
2	Myb_DNA-binding	33.2	1.2e-10	1030	1070	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT eE +++av +G++ ++ I+r++g +R++ qck ++ Gorai.011G240800.2 1030 HWTDEEKSAFLQAVSSYGKD-FDMISRYVG-TRSRDQCKVFFS 1070 6***************99.*****.******8776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.32E-13	796	857	IPR009057	Homeodomain-like
PROSITE profile	PS51293	14.387	808	859	IPR017884	SANT domain
SMART	SM00717	4.0E-7	809	857	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	6.9E-5	812	853	IPR009057	Homeodomain-like
PROSITE profile	PS51293	13.035	1026	1077	IPR017884	SANT domain
SMART	SM00717	4.5E-9	1027	1075	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	5.38E-11	1028	1077	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.8E-6	1028	1071	IPR009057	Homeodomain-like
Pfam	PF00249	1.4E-8	1030	1070	IPR001005	SANT/Myb domain
CDD	cd00167	7.90E-8	1031	1069	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1721 aa Download sequence Send to blast
MPPEPLPWDR KDFYKERKHE RTQSLPQQPL TARWRESSSM SPYQHASFRE FTRWGSADFR 60 RPPGHGRQGS WHLFAEENGG HGYVPSRSSN KILDDENFRQ LDSCVDGKYS RNSRENNRGS 120 SSQRDWRGHS WENCNGSPST PGRPHLVNNE RRSVDDMPTY LSHTHSDFVN TWDQLQKSQH 180 DNKTIAVNGL GTGQKCQSEN FVGSIDWKPL KWTRSGSLSS RGSGFSHSSS SKSLGGVDSG 240 EGKLELQQKN LTPVQSPSGD AAACVTSPAP SDETSSRKKP RLAWGEGLAK YEKKKVEGPD 300 TSIDRAGAKI SVRNTEFNNF LSSNLADKSP RVLGFSDCAS PATPSSVACS SSPGVEEKSF 360 GKAANVDNDT SNLCGSPTLG SQNHLEGPSF NLEKLDINSI INMGSSLTNL LQADDPCTVD 420 SSFVRSTAIS KLLLWKSDVL KALEMTESEI DSLESELKLL KGDSRSRCPC PATSSSFPEE 480 HGKACGEQEA ASSLIPRPAP LQIDACGDVL VGKQPLCNGV LEEVNDDVKD GDIDSPGTAT 540 SKFMEPLSLE KAVSPSDVVK FHECSGDFGT VQLMSMGKVI LATGSGNAGT ATTISAEGSV 600 LKRIDNDAHV PESSNSDVGD ENVMYEMILA TNKELAHVAS EVFNKLLPKD QYNSEIGNVA 660 CTQSDSAIRN KIAIRKQYLR FKERVLTIKF KAFQNAWKED LRSPSMRKYR AKSQKKYEFS 720 LRSAHGGYQK HRSSIHSRLT SPGNPILEPR AEMINFTSKL LLGSHGRLYR NALKMPALIL 780 DEKEKKVSRF ISSNGLVEDP CAIEKERALI NPWTSQEKEI FMAKLAAFGK DFRKIASFLD 840 HKTTADCVEF YYKNHKSECF EKTKKNDLSK QQGKSAVNTY LLTSGKKRGR ELNAASLDVL 900 GAASVIAAHA ESGMRNRHTS GRILLRGRFD SKRSQLDDSI AERSSNFDIV GSDQDTVAAD 960 VLAGICGSFS SEAMSSCITS SADPGEGYHH DWKCHKVDSV VKRPSTSDVL QNVDGDTCSD 1020 ESCGEMESSH WTDEEKSAFL QAVSSYGKDF DMISRYVGTR SRDQCKVFFS KARKCLGLDL 1080 IHSRTRNMGT PMSDDANGGE TDTEDACVQE SSVVCSEKLG SKVEEDLPST IVSMNVDESD 1140 LTREANLQSD HNISEGNIER LADHKDSVAA EVNFSNVDHT EPISECGAGD MDVDSNQAES 1200 LHVQNNVALA NISALENHVA EEGVSVAVSA SHGGTGDCHP SLDASVEPKS GAAVLSTEGF 1260 GNNLEAQETL SSKNVMDVRD TRCNAEIDSQ VICRPDLDKS SGESIDKNSC LDFSFNSEGL 1320 RQVPLDLGSA GKPSILLFPN ENFSAKNSAS HSDASQCEKI CNQDRLSATL AYQGNEDKQP 1380 NNAVSGHEPE HLSGKPSVDL AELQISTLKE MDIDIGHSQL PEVKRLSTSG KGVTGLYLVQ 1440 DYLQKCNGPK SPSEFPQLVQ NLEQTNSRPK SHSRSLSDTE KPCRNGNVKL FGQILNSSSQ 1500 DDGKIRFPEQ SMKSSNLNFR GHNNVDGNAS FSKFDQNIIF APENVPRRSY GFWDGNRIQT 1560 GLSSLPDSEI LVAKYPAAFV NYPASSSQMQ LQASRTIVRN TDRNMNGVSV FTPREISSNN 1620 GVMDYQVYGG HDCTKVVVPF AMDMKRREMF SEMQRRNGFD AISNLQHQGR GMVGMNVVGT 1680 GVGGVVGGSC PNLSDPVAVL RMQYAKTEQY GGQSGSIMRE *

Sequence ? help Back to Top

Protein Sequence Length: 1721 aa Download sequence Send to blast

MPPEPLPWDR KDFYKERKHE RTQSLPQQPL TARWRESSSM SPYQHASFRE FTRWGSADFR  60
RPPGHGRQGS WHLFAEENGG HGYVPSRSSN KILDDENFRQ LDSCVDGKYS RNSRENNRGS  120
SSQRDWRGHS WENCNGSPST PGRPHLVNNE RRSVDDMPTY LSHTHSDFVN TWDQLQKSQH  180
DNKTIAVNGL GTGQKCQSEN FVGSIDWKPL KWTRSGSLSS RGSGFSHSSS SKSLGGVDSG  240
EGKLELQQKN LTPVQSPSGD AAACVTSPAP SDETSSRKKP RLAWGEGLAK YEKKKVEGPD  300
TSIDRAGAKI SVRNTEFNNF LSSNLADKSP RVLGFSDCAS PATPSSVACS SSPGVEEKSF  360
GKAANVDNDT SNLCGSPTLG SQNHLEGPSF NLEKLDINSI INMGSSLTNL LQADDPCTVD  420
SSFVRSTAIS KLLLWKSDVL KALEMTESEI DSLESELKLL KGDSRSRCPC PATSSSFPEE  480
HGKACGEQEA ASSLIPRPAP LQIDACGDVL VGKQPLCNGV LEEVNDDVKD GDIDSPGTAT  540
SKFMEPLSLE KAVSPSDVVK FHECSGDFGT VQLMSMGKVI LATGSGNAGT ATTISAEGSV  600
LKRIDNDAHV PESSNSDVGD ENVMYEMILA TNKELAHVAS EVFNKLLPKD QYNSEIGNVA  660
CTQSDSAIRN KIAIRKQYLR FKERVLTIKF KAFQNAWKED LRSPSMRKYR AKSQKKYEFS  720
LRSAHGGYQK HRSSIHSRLT SPGNPILEPR AEMINFTSKL LLGSHGRLYR NALKMPALIL  780
DEKEKKVSRF ISSNGLVEDP CAIEKERALI NPWTSQEKEI FMAKLAAFGK DFRKIASFLD  840
HKTTADCVEF YYKNHKSECF EKTKKNDLSK QQGKSAVNTY LLTSGKKRGR ELNAASLDVL  900
GAASVIAAHA ESGMRNRHTS GRILLRGRFD SKRSQLDDSI AERSSNFDIV GSDQDTVAAD  960
VLAGICGSFS SEAMSSCITS SADPGEGYHH DWKCHKVDSV VKRPSTSDVL QNVDGDTCSD  1020
ESCGEMESSH WTDEEKSAFL QAVSSYGKDF DMISRYVGTR SRDQCKVFFS KARKCLGLDL  1080
IHSRTRNMGT PMSDDANGGE TDTEDACVQE SSVVCSEKLG SKVEEDLPST IVSMNVDESD  1140
LTREANLQSD HNISEGNIER LADHKDSVAA EVNFSNVDHT EPISECGAGD MDVDSNQAES  1200
LHVQNNVALA NISALENHVA EEGVSVAVSA SHGGTGDCHP SLDASVEPKS GAAVLSTEGF  1260
GNNLEAQETL SSKNVMDVRD TRCNAEIDSQ VICRPDLDKS SGESIDKNSC LDFSFNSEGL  1320
RQVPLDLGSA GKPSILLFPN ENFSAKNSAS HSDASQCEKI CNQDRLSATL AYQGNEDKQP  1380
NNAVSGHEPE HLSGKPSVDL AELQISTLKE MDIDIGHSQL PEVKRLSTSG KGVTGLYLVQ  1440
DYLQKCNGPK SPSEFPQLVQ NLEQTNSRPK SHSRSLSDTE KPCRNGNVKL FGQILNSSSQ  1500
DDGKIRFPEQ SMKSSNLNFR GHNNVDGNAS FSKFDQNIIF APENVPRRSY GFWDGNRIQT  1560
GLSSLPDSEI LVAKYPAAFV NYPASSSQMQ LQASRTIVRN TDRNMNGVSV FTPREISSNN  1620
GVMDYQVYGG HDCTKVVVPF AMDMKRREMF SEMQRRNGFD AISNLQHQGR GMVGMNVVGT  1680
GVGGVVGGSC PNLSDPVAVL RMQYAKTEQY GGQSGSIMRE *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4a69_C	2e-16	770	861	4	94	NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D	2e-16	770	861	4	94	NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012454303.1	0.0	PREDICTED: uncharacterized protein LOC105776280 isoform X2
TrEMBL	A0A0D2UXI3	0.0	A0A0D2UXI3_GOSRA; Uncharacterized protein
STRING	Gorai.011G240800.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	0.0	MYB family protein

Link Out ? help Back to Top
Phytozome	Gorai.011G240800.2
Entrez Gene	105776280

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]