PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gorai.011G238900.1 | ||||||||
Common Name | B456_011G238900, LOC105776854 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | ARF | ||||||||
Protein Properties | Length: 686aa MW: 75691.2 Da PI: 7.0226 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 74.1 | 1.6e-23 | 121 | 222 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f k+lt+sd+++ g +++p+ +ae++ +++ + t+ +d +g++W++++iyr++++r++lt+GW++Fv+ ++L +gD++vF + Gorai.011G238900.1 121 FAKTLTQSDANNGGGFSVPRYCAETIfprldynAEPPVQ--TILAKDVHGEVWKFRHIYRGTPRRHLLTTGWSNFVNHKKLVAGDSIVFLR 209 89****************************985444444..8999*********************************************3 PP -SSSEE..EEEEE-S CS B3 85 dgrsefelvvkvfrk 99 +++ l+v+++r+ Gorai.011G238900.1 210 --ADNGDLCVGIRRA 222 ..477888****996 PP | |||||||
2 | Auxin_resp | 112.1 | 5.6e-37 | 281 | 364 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa++a+++++FevvY+Pr+st+eF+vk+++v++a+++++ +GmRfkm fetedss++++ +Gt++ + +dp+rWpnS+Wr+L+ Gorai.011G238900.1 281 AASRAASGQPFEVVYYPRTSTPEFCVKASSVRAAMQIQWYPGMRFKMPFETEDSSRISWfMGTISTAKVVDPIRWPNSPWRLLQ 364 68899*****************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 5.62E-29 | 113 | 224 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-36 | 116 | 224 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.01E-21 | 120 | 221 | No hit | No description |
Pfam | PF02362 | 1.5E-21 | 121 | 222 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.6E-22 | 121 | 223 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.183 | 121 | 223 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 3.7E-32 | 281 | 364 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 20.044 | 599 | 682 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007389 | Biological Process | pattern specification process | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 686 aa Download sequence Send to blast |
MITVMDSRKE VVKNSEKCLD PQLWHACAGG MVQMPSVNSK VFYFPQGHAE HANGNVDFGN 60 LPIPSLVLCR VSAVRFMADP ETDEVYAKIM LVPLRENSFG VEDDGFDGNV GVENPEKSAS 120 FAKTLTQSDA NNGGGFSVPR YCAETIFPRL DYNAEPPVQT ILAKDVHGEV WKFRHIYRGT 180 PRRHLLTTGW SNFVNHKKLV AGDSIVFLRA DNGDLCVGIR RAKRGLGGGH EFPGWNSASG 240 TSGSQIGSYS PFLREGESKL MRKDCSGDPR GRVRADSVIE AASRAASGQP FEVVYYPRTS 300 TPEFCVKASS VRAAMQIQWY PGMRFKMPFE TEDSSRISWF MGTISTAKVV DPIRWPNSPW 360 RLLQVAWDEP DLLHNVKRVS PWLVELVTNI PAINLNPFSP PRKKMRLPQH PDFSFLNQIP 420 MPSFSGNTFR SSSPMRCITD NIPGGIQGAR HEPFGLSSSD LRSNKLHSGL FPSGFHQLDR 480 TAPPIRLSGD NFCSDHPNNT NISSLLTIGN PTQSLKQSND SKTPHIVLFG QLIFCEQRAS 540 QSCSGDTVGN SSSDGNTEKT AISSDGTGSV LHQNVRENSS DEGFPWCKEH QKTDLGLETG 600 HCKVFMESEN VGRTLDLSVL GSYEELYGKL ANMFGIESSE MLSSVLYRDA AGSVKHTGDE 660 PFSEFMKTAR RLTILMDSSS DNLER* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 6e-78 | 1 | 385 | 33 | 388 | Auxin response factor 5 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00461 | DAP | Transfer from AT4G30080 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012455248.1 | 0.0 | PREDICTED: auxin response factor 18-like | ||||
Swissprot | Q653H7 | 0.0 | ARFR_ORYSJ; Auxin response factor 18 | ||||
TrEMBL | A0A0D2UXF0 | 0.0 | A0A0D2UXF0_GOSRA; Auxin response factor | ||||
STRING | Gorai.011G238900.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM580 | 27 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G30080.1 | 0.0 | auxin response factor 16 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Gorai.011G238900.1 |
Entrez Gene | 105776854 |
Publications ? help Back to Top | |||
---|---|---|---|
|