PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.011G234400.1

Common Name

B456_011G234400, LOC105778685

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 373aa MW: 41235.3 Da PI: 7.3854

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.011G234400.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.5	0.0009	146	168	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H Gorai.011G234400.1 146 YECKTCNRTFPSFQALGGHRASH 168 99**********99999998887 PP
2	zf-C2H2	12.9	0.00034	255	277	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H Gorai.011G234400.1 255 HECSICGSEFTSGQALGGHMRRH 277 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.73E-8	145	168	No hit	No description
Pfam	PF13912	3.5E-13	145	170	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.637	146	173	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.052	146	168	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	148	168	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.73E-8	250	277	No hit	No description
Gene3D	G3DSA:3.30.160.60	3.7E-4	253	279	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF13912	1.6E-11	254	279	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.367	255	282	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.019	255	277	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	257	277	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence Send to blast
MEAPEEVPVG SKDQTNNIIV KGKRTKRLRP QSPIPFAIAS NNSIFNGDNV VNMENNNNNY 60 GEYLSLSSSS DNYQDSTTEE EEDMANCLIL LAQGQSREPP PKLLQQPNDH HPHQQHDPGV 120 VYNKFNSRRF MEAASNGDGK AGYYVYECKT CNRTFPSFQA LGGHRASHKK PKAAATIDEK 180 IRQFTAGTTT IGLSDEEEGQ HQQQQFMKTN NVSSLSLQLS NTNNYNNHNI NNRVLYGNSN 240 KDNNNNNNGK PNKVHECSIC GSEFTSGQAL GGHMRRHRGS IGGGSNSAVA ANTALSLKVA 300 TPLEQPQQPK KPKNVLSLDL DLNLPATDDV DHREPKFSFA SKQQQQQQQQ QQQQQQQSAL 360 VFSAPTLVDC HY*

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence Send to blast

MEAPEEVPVG SKDQTNNIIV KGKRTKRLRP QSPIPFAIAS NNSIFNGDNV VNMENNNNNY  60
GEYLSLSSSS DNYQDSTTEE EEDMANCLIL LAQGQSREPP PKLLQQPNDH HPHQQHDPGV  120
VYNKFNSRRF MEAASNGDGK AGYYVYECKT CNRTFPSFQA LGGHRASHKK PKAAATIDEK  180
IRQFTAGTTT IGLSDEEEGQ HQQQQFMKTN NVSSLSLQLS NTNNYNNHNI NNRVLYGNSN  240
KDNNNNNNGK PNKVHECSIC GSEFTSGQAL GGHMRRHRGS IGGGSNSAVA ANTALSLKVA  300
TPLEQPQQPK KPKNVLSLDL DLNLPATDDV DHREPKFSFA SKQQQQQQQQ QQQQQQQSAL  360
VFSAPTLVDC HY*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00487	DAP	Transfer from AT5G04390	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX614615	0.0	JX614615.1 Gossypium hirsutum clone NBRI_GE58141 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012457885.1	0.0	PREDICTED: zinc finger protein ZAT5-like
TrEMBL	A0A0D2RRY9	0.0	A0A0D2RRY9_GOSRA; Uncharacterized protein
STRING	Gorai.011G234400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2231	27	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04390.1	1e-59	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Gorai.011G234400.1
Entrez Gene	105778685

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]