PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G226600.1
Common NameB456_011G226600
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 661aa    MW: 75586.4 Da    PI: 9.3178
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G226600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.77.5e-12497548154
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                         ++ +h  +Er+RR+++ + ++ Lr llP+       +K s ++ +  Av YI +L
  Gorai.011G226600.1 497 KKSMHRVIERQRRQEMANLYASLRNLLPPnY---IRGKRSISDQVDGAVSYIMYL 548
                         6899*************************66...*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF520583.4E-7143324IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.101.7E-8146317IPR032675Leucine-rich repeat domain, L domain-like
CDDcd000831.46E-9494552No hitNo description
SuperFamilySSF474593.53E-13495565IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.205496548IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.8E-9497548IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.1E-10497564IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0019502554IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 661 aa     Download sequence    Send to blast
MKLRVLKVCI YGQTNFSKRK QLPSNIVLHP EMISKLSRLI ELSIDVDPSD KWWHDSVEEV  60
VKGVCNLEGL RSLCLYLPNY QLLDYTSFIY PSLSCFRFTV GHHKRRTISR VPHEVEAQFT  120
KWDKCLKFVN GENIPFQVRK VLKFTSSFFL DRHENASSLS EFGNENMVML KYCLLVDCNK  180
METIIDGAEV ETVLESLQYL SIHYMKNLRS IWKGPTRSGC MSKLKFLALH TCPKLSYIFS  240
HVLLRNFVNL EEIIVEDCPQ VSSLVSHVPA LPYLKPFLPS LKRLFLLYLP ELVSISNGLS  300
IAPKLEGIGF YDCPKLKVLS KTELSSKALK TIKGEKQWWE DIKWNKIDWE NGPRNLMRIF  360
SPINNEKDVT VQLLEDRNVF EAQQSDTTLC TRKSVDIYAQ QKSQWADCMV KSVPSPCSPT  420
LSSWTQPYLR ITPPLNVKHT RWFSKRQLSN LVSYPSYNKQ NKSSEKCCLA VVSGSRGRQQ  480
KLLASGKREN SNDDDKKKSM HRVIERQRRQ EMANLYASLR NLLPPNYIRG KRSISDQVDG  540
AVSYIMYLKN RIDGLSGKRD ELKKVWGNSS GFHQGMSMSC IEAFPSSVVV RQSLDGVEIV  600
ISDSVGAQAL TLSKVLQQLL EEGLDVVNCV SSRTDASLIH TIKYEVSDMR GVDPSFCWRN  660
*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012457555.10.0PREDICTED: uncharacterized protein LOC105778412 isoform X1
RefseqXP_012457556.10.0PREDICTED: uncharacterized protein LOC105778412 isoform X1
TrEMBLA0A0D2UWW00.0A0A0D2UWW0_GOSRA; Uncharacterized protein
STRINGGorai.011G226600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM802034
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51780.11e-34bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]