PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G217200.4
Common NameB456_011G217200
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 333aa    MW: 37037.7 Da    PI: 9.6231
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G217200.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.15.1e-104787545
                        CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45
                        k  rr+++NReAAr+sR+RKka++++Le    +L++  ++L
  Gorai.011G217200.4 47 KTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 87
                        7889************************9777777666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003386.5E-843106IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.4154589IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.44E-74790No hitNo description
PfamPF001705.0E-74787IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.0E-74892No hitNo description
PROSITE patternPS0003605065IPR004827Basic-leucine zipper domain
PfamPF141442.7E-34129204IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0009627Biological Processsystemic acquired resistance
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MADGSPKTDI STDADTDEKS QRFDRGKSSI VAVSDSSDRS KSNLDQKTLR RLAQNREAAR  60
KSRLRKKAYV QQLESSRLKL TQLEQELQRA RQQGIFISSS GDQSHSMGGN GAMAFDVEYA  120
RWLEEQNRQI NELRTAVNSH ASDAELRIIV DGVMAHYDEI FRLKSNAAKA DVFHLLSGMW  180
KTPAERCFLW LGGFRSSELL KLLVNQLEPL TEQQLVGIGN LQQSSQQAED ALSQGMEALQ  240
QSLAETLSTG SLGSSGSSGN VANYMGQMAM AMGKLGTLEG FIRQADNLRQ QTLQQMHRIL  300
TTRQSARALL AIHDYFSRLR ALSSLWLARP RE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.37010.0flower| flowering
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO488212260.0
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00349DAPTransfer from AT3G12250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016677008.10.0PREDICTED: transcription factor TGA2-like isoform X1
RefseqXP_016677009.10.0PREDICTED: transcription factor TGA2-like isoform X1
RefseqXP_016677010.10.0PREDICTED: transcription factor TGA2-like isoform X1
RefseqXP_016677012.10.0PREDICTED: transcription factor TGA2-like isoform X3
RefseqXP_016677013.10.0PREDICTED: transcription factor TGA2-like isoform X3
RefseqXP_016677014.10.0PREDICTED: transcription factor TGA2-like isoform X3
RefseqXP_016677016.10.0PREDICTED: transcription factor TGA2-like isoform X3
RefseqXP_016677017.10.0PREDICTED: transcription factor TGA2-like isoform X3
RefseqXP_016677018.10.0PREDICTED: transcription factor TGA2-like isoform X4
RefseqXP_017649120.10.0PREDICTED: transcription factor TGA2-like isoform X1
RefseqXP_017649121.10.0PREDICTED: transcription factor TGA2-like isoform X1
RefseqXP_017649122.10.0PREDICTED: transcription factor TGA2-like isoform X1
RefseqXP_017649123.10.0PREDICTED: transcription factor TGA2-like isoform X1
RefseqXP_017649124.10.0PREDICTED: transcription factor TGA2-like isoform X1
RefseqXP_017649125.10.0PREDICTED: transcription factor TGA2-like isoform X2
RefseqXP_017649126.10.0PREDICTED: transcription factor TGA2-like isoform X2
RefseqXP_017649127.10.0PREDICTED: transcription factor TGA2-like isoform X2
RefseqXP_017649128.10.0PREDICTED: transcription factor TGA2-like isoform X2
RefseqXP_017649129.10.0PREDICTED: transcription factor TGA2-like isoform X2
RefseqXP_017649130.10.0PREDICTED: transcription factor TGA2-like isoform X3
SwissprotQ415580.0HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBLA0A0B0PAK60.0A0A0B0PAK6_GOSAR; Uncharacterized protein
TrEMBLA0A0D2RR040.0A0A0D2RR04_GOSRA; Uncharacterized protein
TrEMBLA0A1U8IFY60.0A0A1U8IFY6_GOSHI; transcription factor TGA2-like isoform X1
TrEMBLA0A1U8IFZ40.0A0A1U8IFZ4_GOSHI; transcription factor TGA2-like isoform X3
TrEMBLA0A1U8IKV60.0A0A1U8IKV6_GOSHI; transcription factor TGA2-like isoform X4
STRINGGorai.011G217200.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-170TGACG motif-binding factor 6
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]