PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G217200.3
Common NameB456_011G217200
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 427aa    MW: 47102.5 Da    PI: 6.0925
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G217200.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.67.2e-10167207545
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                         k  rr+++NReAAr+sR+RKka++++Le    +L++  ++L
  Gorai.011G217200.3 167 KTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 207
                         7889************************9777777666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003386.5E-8163226IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.415165209IPR004827Basic-leucine zipper domain
PfamPF001707.0E-7167207IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.25E-7167210No hitNo description
CDDcd147082.00E-22167219No hitNo description
Gene3DG3DSA:1.20.5.1701.4E-7168211No hitNo description
PROSITE patternPS000360170185IPR004827Basic-leucine zipper domain
PfamPF141441.6E-11270298IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0009627Biological Processsystemic acquired resistance
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MPGFDSQLPV TNILCSEGST IHPFPVSNFG TFDQSVGFRL EDAVNLSGNC AVFDSAKVSR  60
QEVPSDRDLI IGTSDKTPTS FTNYPSTNQV ESPRLQLEKG QETNLVSIPS GNTENWGESN  120
MADGSPKTDI STDADTDEKS QRFDRGKSSI VAVSDSSDRS KSNLDQKTLR RLAQNREAAR  180
KSRLRKKAYV QQLESSRLKL TQLEQELQRA RQQGIFISSS GDQSHSMGGN GAMAFDVEYA  240
RWLEEQNRQI NELRTAVNSH ASDAELRIIV DGMWKTPAER CFLWLGGFRS SELLKLLVNQ  300
LEPLTEQQLV GIGNLQQSSQ QAEDALSQGM EALQQSLAET LSTGSLGSSG SSGNVANYMG  360
QMAMAMGKLG TLEGFIRQAD NLRQQTLQQM HRILTTRQSA RALLAIHDYF SRLRALSSLW  420
LARPRE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.37010.0flower| flowering
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO488212260.0
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00349DAPTransfer from AT3G12250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012455191.10.0PREDICTED: transcription factor TGA2-like isoform X2
RefseqXP_012455192.10.0PREDICTED: transcription factor TGA2-like isoform X2
SwissprotQ6IVC20.0TGAL1_ORYSJ; Transcription factor TGAL1
TrEMBLA0A0D2UWC30.0A0A0D2UWC3_GOSRA; Uncharacterized protein
STRINGGorai.011G217200.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-145TGACG motif-binding factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]