PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G217200.2
Common NameB456_011G217200
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 428aa    MW: 47308.9 Da    PI: 6.1933
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G217200.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_128.82.7e-09138182145
                         XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                         ek+ +  rr+++NReAAr+sR+RKka++++Le    +L++  ++L
  Gorai.011G217200.2 138 EKSQRTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 182
                         6788889*************************9777777666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1708.5E-8135185No hitNo description
SMARTSM003383.6E-8138201IPR004827Basic-leucine zipper domain
PfamPF001702.0E-6138182IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.174140184IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.75E-7142185No hitNo description
CDDcd147082.20E-22142194No hitNo description
PROSITE patternPS000360145160IPR004827Basic-leucine zipper domain
PfamPF141444.1E-34224299IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0009627Biological Processsystemic acquired resistance
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MPGFDSQLPV TNILCSEGST IHPFPVSNFG TFDQSVGFRL EDAVNLSGNC AVFDSAKVSR  60
QEVPSDRDLI IGTSDKTPTS FTNYPSTNQV ESPRLQLEKG QETNLVSIPS GNTENWGESN  120
MADGSPKTDI STDADTDEKS QRTLRRLAQN REAARKSRLR KKAYVQQLES SRLKLTQLEQ  180
ELQRARQQGI FISSSGDQSH SMGGNGAMAF DVEYARWLEE QNRQINELRT AVNSHASDAE  240
LRIIVDGVMA HYDEIFRLKS NAAKADVFHL LSGMWKTPAE RCFLWLGGFR SSELLKLLVN  300
QLEPLTEQQL VGIGNLQQSS QQAEDALSQG MEALQQSLAE TLSTGSLGSS GSSGNVANYM  360
GQMAMAMGKL GTLEGFIRQA DNLRQQTLQQ MHRILTTRQS ARALLAIHDY FSRLRALSSL  420
WLARPRE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.37010.0flower| flowering
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO488212260.0
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00349DAPTransfer from AT3G12250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012455193.10.0PREDICTED: transcription factor TGA2-like isoform X3
SwissprotO241600.0TGA21_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-2.1
TrEMBLA0A0D2VQ390.0A0A0D2VQ39_GOSRA; Uncharacterized protein
STRINGGorai.011G217200.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-157TGACG motif-binding factor 6
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]