PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.011G209200.1 | ||||||||
Common Name | B456_011G209200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bZIP | ||||||||
Protein Properties | Length: 260aa MW: 28123.3 Da PI: 6.3093 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 33.9 | 6.8e-11 | 162 | 214 | 5 | 57 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 kr++r + NR +A rs +RK +i eLe+kv++L++e ++L +l + Gorai.011G209200.1 162 KRAKRIIANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTT 214 9****************************************999877666555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 6.3E-17 | 158 | 222 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.622 | 160 | 223 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 4.15E-11 | 162 | 213 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 6.1E-11 | 162 | 216 | No hit | No description |
Pfam | PF00170 | 1.7E-9 | 162 | 211 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14703 | 2.26E-23 | 163 | 212 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MQDPPSLKPN PDPPVPSNAS STTPSFPNPT TFRGSYHRRA QSEVQFRIPD DLDLVSDPFE 60 GMGSEDDLFC SYMDIEKLGG SSKGAEEGGG ATGSSTVGSA HNPKGDEISG GSAGMGEKTN 120 EGGKGRHRYS NSVDGCSLME SIEAKKAMAP DKLAELWTID PKRAKRIIAN RQSAARSKER 180 KARYISELER KVQTLQTEAT TLSAQLTLFQ RDTTGLTTEN TELKLRLQAM EQQAQLRDAL 240 NEALKKEVER LKMATATAS* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gra.515 | 1e-137 | seedling |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. Strongly expressed in mature pollen. {ECO:0000269|PubMed:27896439}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269|PubMed:27896439}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00303 | DAP | Transfer from AT2G40620 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012456653.1 | 0.0 | PREDICTED: transcription factor RF2b-like | ||||
Swissprot | O22873 | 1e-104 | BZP18_ARATH; bZIP transcription factor 18 | ||||
TrEMBL | A0A0D2UWF3 | 0.0 | A0A0D2UWF3_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.011G209200.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40620.1 | 1e-103 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.011G209200.1 |