PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G198600.1
Common NameB456_011G198600, LOC105776622
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family CAMTA
Protein Properties Length: 915aa    MW: 102997 Da    PI: 7.7409
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G198600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1165.21.1e-51291462118
                CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseen 91 
                         ++e k+rwl+++ei+aiL n++ + ++ ++ + p+sg+++L++rk++r+frkDG++wkkkkdgktv+E+he+LKvg+ e +++yYah+ +n
  Gorai.011G198600.1  29 MEEaKSRWLRPNEIHAILSNYKYFPIHVKPVNLPQSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGLDN 119
                         55669************************************************************************************** PP

                CG-1  92 ptfqrrcywlLeeelekivlvhylevk 118
                         ptf rrcywlL+++le+ivlvhy+e+k
  Gorai.011G198600.1 120 PTFVRRCYWLLDKTLENIVLVHYRETK 146
                         ************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143778.15425151IPR005559CG-1 DNA-binding domain
SMARTSM010761.8E-7528146IPR005559CG-1 DNA-binding domain
PfamPF038594.4E-4631144IPR005559CG-1 DNA-binding domain
SuperFamilySSF812961.4E-12361447IPR014756Immunoglobulin E-set
SuperFamilySSF484032.8E-18533657IPR020683Ankyrin repeat-containing domain
PfamPF127961.1E-7546625IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.205.3E-17549658IPR020683Ankyrin repeat-containing domain
CDDcd002041.61E-15551655No hitNo description
PROSITE profilePS5029715.99563667IPR020683Ankyrin repeat-containing domain
SMARTSM002481.7E-6596625IPR002110Ankyrin repeat
PROSITE profilePS5008812.155596628IPR002110Ankyrin repeat
SMARTSM002482700635666IPR002110Ankyrin repeat
PROSITE profilePS500966.815744770IPR000048IQ motif, EF-hand binding site
SMARTSM0001560759781IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.218760789IPR000048IQ motif, EF-hand binding site
PfamPF006120.22762780IPR000048IQ motif, EF-hand binding site
SMARTSM000150.02782804IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.45783807IPR000048IQ motif, EF-hand binding site
PfamPF006125.1E-4784803IPR000048IQ motif, EF-hand binding site
SMARTSM0001510862884IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.242864891IPR000048IQ motif, EF-hand binding site
PfamPF006120.15864884IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 915 aa     Download sequence    Send to blast
MDGSGSGRLA GTEIHGFYTL EDLDVQTMME EAKSRWLRPN EIHAILSNYK YFPIHVKPVN  60
LPQSGTIVLF DRKMLRNFRK DGHNWKKKKD GKTVKEAHEH LKVGNEERIH VYYAHGLDNP  120
TFVRRCYWLL DKTLENIVLV HYRETKEGSP ATPVNSNSCL TTDQSTPLLV MEDFDSGAAN  180
AYYKDLSDSI NANHEMTLHE INTLEWDELL VTNDGNDSAV SSGDMSTCFD QWNQKMVNGL  240
SNDGGPISAY NSSPDISLLD NLVDPVAQSN NAYLNTPGGV CYQTPGTEVN STVQREDSSA  300
IGMGKSLDLL INNGLESQDS FGKWINCTVT GSPCSMGDPV PESSSSSGQD SLTSPGEIFS  360
ITEVSPAWAY STEKTKILVT GVFHQAYQHL AKSNLFCVCG DVCYPVETIQ VGVYRCLLSQ  420
HAPGLVKLYM SLDGHKPISQ VLNFEYRAPL LHDPVVPLED KSRWEEFRLQ MRLAYLLFST  480
SKSLSILSGK VSPNSLKEAK KFAQKTSNIS NSWTYLIQSI EENRASFTQA KDSLFEIALK  540
NRLKDWLLER IIYGSKTTEY DAQGQGVIHL CAILGYAWAI YLFSWSGLSL DFRDKHGWTA  600
LHWAAYYGRE KMVAVLLSAG AKPNLVTDPT TQNPSGCTAA DLASLNGYDG LAAYLSEEAL  660
VAQFNDMALA GNASGSLQTS RTEATNLVNL KEDELYLRET LAAYRTAADA AARINTAFRA  720
HSFKVRAKAV ESYNAEEEAR SIIAAMKIQH AFRNYEAKRK MAAAARIQYR FRTWKMRKDF  780
LNMRRQAIKI QAAFRGFQAR RQYCKIIWSV GVLEKAILRW RLRRKGFRGL QITTDEAVEE  840
QRQETYVEEA YYISSRKQAE ERVEKAVVRV QSMFRSKKAQ QEYRRMKLAH DLATLEYESL  900
IGPLSDMMLK DHRK*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, pollen, top of sepals and siliques. {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:14581622}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:14581622, ECO:0000269|PubMed:28351986, ECO:0000305|PubMed:11925432}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269|PubMed:12218065}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5884741e-118JX588474.1 Gossypium hirsutum clone NBRI_GE22909 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012454840.10.0PREDICTED: calmodulin-binding transcription activator 5-like isoform X2
SwissprotO234630.0CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBLA0A0D2VPB60.0A0A0D2VPB6_GOSRA; Uncharacterized protein
STRINGGorai.011G198600.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16150.10.0calmodulin binding;transcription regulators
Publications ? help Back to Top
  1. Ye J, et al.
    Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes.
    Plant Cell, 2009. 21(12): p. 3868-84
    [PMID:20023198]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]
  4. Lan Y,Liu X,Fu Y,Huang S
    Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips.
    PLoS Genet., 2018. 14(11): p. e1007789
    [PMID:30418966]