PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.011G193600.1 | ||||||||
Common Name | B456_011G193600, LOC105777318 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 256aa MW: 28812.4 Da PI: 7.5021 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.6 | 1e-20 | 90 | 138 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+G+r+++ +g+W+AeIrdp + r++lg++ taeeAa+a+++a+k+++g Gorai.011G193600.1 90 YRGIRQRP-WGKWAAEIRDPH----KgVRVWLGTYNTAEEAARAYDEAAKRIRG 138 9*******.**********72....35************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 23.973 | 89 | 146 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.02E-23 | 89 | 147 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.10E-33 | 89 | 148 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 7.4E-33 | 89 | 147 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-37 | 89 | 152 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.1E-14 | 90 | 138 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-11 | 90 | 101 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-11 | 112 | 128 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008219 | Biological Process | cell death | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0010286 | Biological Process | heat acclimation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0051707 | Biological Process | response to other organism | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MCGGAIISDF IAVKRGRKLT AEDLWSELDT FSDLLGLDYG NGKDPFSQFD NTKAGSKAKN 60 LEKVTNESTQ KTSRGREKEG KTQRTRKNIY RGIRQRPWGK WAAEIRDPHK GVRVWLGTYN 120 TAEEAARAYD EAAKRIRGDK AKLNFPQTPR LTQPPAKKRC MMAPELTPPS SETKSSPTPQ 180 PFMGFGYENG VYRPSEAMES EMELKEQISS LESFLGLEPD EMTTELSGSA EPESVNLWML 240 DDLVTHHQQQ PQLFY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-22 | 90 | 146 | 6 | 63 | ATERF1 |
3gcc_A | 3e-22 | 90 | 146 | 6 | 63 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gra.302 | 0.0 | seedling |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in stems and leaves, and, to a lower extent, in roots, siliques and flowers. {ECO:0000269|PubMed:18836139, ECO:0000269|PubMed:9192694}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:9159183}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00109 | PBM | Transfer from AT3G16770 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By 1-aminocyclopropane-1-carboxylic acid (ACC, ethylene precursor), methyl jasmonate (MeJA), and Botrytis cinerea. Also induced by cadmium. {ECO:0000269|PubMed:18836139, ECO:0000269|PubMed:9159183}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY779338 | 0.0 | AY779338.1 Gossypium hirsutum AP2/EREBP transcription factor ERF-2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012455978.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-3 | ||||
Swissprot | P42736 | 6e-62 | RAP23_ARATH; Ethylene-responsive transcription factor RAP2-3 | ||||
TrEMBL | A0A0D2UVB3 | 0.0 | A0A0D2UVB3_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.011G193600.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16770.1 | 1e-53 | ethylene-responsive element binding protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.011G193600.1 |
Entrez Gene | 105777318 |