PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G188400.1
Common NameB456_011G188400, LOC105777285
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 472aa    MW: 50064.2 Da    PI: 8.2266
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G188400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.12.2e-114468327
                        S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                         ++C +++rtG+C yG++C+F+H++
  Gorai.011G188400.1 44 KANCIYYLRTGFCGYGSKCRFNHPR 68
                        579********************96 PP
2zf-CCCH352.3e-1190114327
                         S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                         ++ C++++r GtCk+G++Ck++H++
  Gorai.011G188400.1  90 QPVCQYYMRKGTCKFGSSCKYHHPK 114
                         689********************96 PP
3zf-CCCH36.48.7e-12135159226
                         -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                         ++++C++f +tG+Ck+G++CkF+H+
  Gorai.011G188400.1 135 GEKECSYFVKTGQCKFGATCKFHHP 159
                         7899********************9 PP
4zf-CCCH36.67.6e-12295321127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         +++++C+++++t  CkyG++Ck++H+p
  Gorai.011G188400.1 295 PGQPECQYYMKTRNCKYGSSCKYHHPP 321
                         5789*********************97 PP
5zf-CCCH331e-10343367327
                         S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                          ++C ++++ G Ck+G  CkF H++
  Gorai.011G188400.1 343 APPCIHYSQHGVCKFGVACKFDHPM 367
                         689********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.7E-44168IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.3244169IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.22E-64370IPR000571Zinc finger, CCCH-type
PfamPF006425.3E-94468IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-54768IPR000571Zinc finger, CCCH-type
SMARTSM003567.5E-787114IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.15587115IPR000571Zinc finger, CCCH-type
PfamPF006425.3E-990114IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-690114IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-492113IPR000571Zinc finger, CCCH-type
SMARTSM003563.6E-6133160IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.812133161IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-9135159IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-6135161IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4139158IPR000571Zinc finger, CCCH-type
SMARTSM003566.4E-5294321IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.497294322IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-9296321IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-5298322IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4300321IPR000571Zinc finger, CCCH-type
SMARTSM003560.024340367IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.821341368IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-8343367IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.89E-5344370IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MERDPESDPQ PEWAAPGPET GLEEPVWRLG LGGESESYPE RPNKANCIYY LRTGFCGYGS  60
KCRFNHPRDR TGVMGAASGD VGEYPERVGQ PVCQYYMRKG TCKFGSSCKY HHPKQGGDSV  120
SPVPLNYLGY PLRPGEKECS YFVKTGQCKF GATCKFHHPV PPAVEVPAPS PTSQVAPLPT  180
PLSAPTLYHR TQSPSGPLSQ QYGVVMASSP LMPGSYVQGP YGQLLISPGM VSFPSWNPYP  240
AAVSVGTQPA VGSSSMFGVT PLSPSAPAYT RSYQPTPSSV VPSSSIQERS FPERPGQPEC  300
QYYMKTRNCK YGSSCKYHHP PEVIAPKVDV ILNPLGLPIC PGAPPCIHYS QHGVCKFGVA  360
CKFDHPMGTL SYSPSASSLT DMPVAPYPIG STGGTLAPSS SSSDLRPEQL SRSNKESAPP  420
IMSSSVSASS ESVGSIFSKG GLVHHSSAQQ SSQSSFGSGN NSSTTKAQAS S*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012455913.10.0PREDICTED: zinc finger CCCH domain-containing protein 34-like isoform X1
RefseqXP_012455914.10.0PREDICTED: zinc finger CCCH domain-containing protein 34-like isoform X1
RefseqXP_012455915.10.0PREDICTED: zinc finger CCCH domain-containing protein 34-like isoform X1
RefseqXP_012455916.10.0PREDICTED: zinc finger CCCH domain-containing protein 34-like isoform X1
SwissprotQ6NPN31e-158C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBLA0A0D2UV490.0A0A0D2UV49_GOSRA; Uncharacterized protein
STRINGGorai.011G188400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17792786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.11e-146C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]