PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.011G183800.2

Common Name

B456_011G183800

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

SBP

Protein Properties

Length: 714aa MW: 80931.9 Da PI: 6.0673

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.011G183800.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	115.3	3.4e-36	145	220	1	76
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +Cqv+gCe+d+se+k yhrrh++C ++++++vl++g+++r+CqqC++fh ls+fDe+krsCrr+L++hn rrr+k Gorai.011G183800.2 145 RCQVPGCEVDISELKGYHRRHRICLRCANSSTVLIDGETKRYCQQCGKFHLLSNFDEGKRSCRRKLERHNIRRRRK 220 6**********************************************************************99997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	2.7E-28	140	207	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	29.137	143	220	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	4.45E-32	144	222	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	2.0E-27	146	220	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 714 aa Download sequence Send to blast
MHFGDFFYIM DQDPSPATQT PRGDHRSENR KMDFPVTGPE LASSVWDWND LLELTSDDHL 60 PISFDDYGFS PPPLEALAGD PNTVPAPDRV RKRDPRMTCS NFIAGRVPCA CPEIDAQVEK 120 LEEEEAGAPG KKRARTGRVG SGTCRCQVPG CEVDISELKG YHRRHRICLR CANSSTVLID 180 GETKRYCQQC GKFHLLSNFD EGKRSCRRKL ERHNIRRRRK IVGSKTAVNK ESQGAIQSDG 240 IACDGEAGKD DLSGLIAEEE PAFESEEALV SAHCSAPLLQ DIRNDSVITL IDTETDGGKD 300 DSKFSNSTSY CDSKTAYSSM CPTGRISFKL YDWNPAEFPR RLRHQIFEWL ANMPVELEGY 360 IRPGCTILTV FISMPNNMWA KLSENPMTYM HDFVFRPGRM LYGRGFMTIY LNNMIFRTRK 420 DGTSMVKIDA EVQVPRLHFV YPACFEAGKP MEFVACGSNL LQPKFRFLVS FAGRYLPCYY 480 RVASSLVQSK DDSPSCDHQL YKIYIPQTEP DLFGPAFIEV ENQSGLSNFI PVLIGDKEVC 540 SEMKSIQQRF DASVFQERSI FSTTGSLVEA CEMSTSQHRA YSEFLLDIAW LLREPKLENF 600 KETMASSQIL RFNRLLSFLI QNESTIILKK ILQNLKIVVE MIGFDGTNDS GVRLLQKYMN 660 HARDILSDEL QKGEIPVFRS EYIEQERNQV SQSSFDNNEL PIVPKISQVR TQF*

Sequence ? help Back to Top

Protein Sequence Length: 714 aa Download sequence Send to blast

MHFGDFFYIM DQDPSPATQT PRGDHRSENR KMDFPVTGPE LASSVWDWND LLELTSDDHL  60
PISFDDYGFS PPPLEALAGD PNTVPAPDRV RKRDPRMTCS NFIAGRVPCA CPEIDAQVEK  120
LEEEEAGAPG KKRARTGRVG SGTCRCQVPG CEVDISELKG YHRRHRICLR CANSSTVLID  180
GETKRYCQQC GKFHLLSNFD EGKRSCRRKL ERHNIRRRRK IVGSKTAVNK ESQGAIQSDG  240
IACDGEAGKD DLSGLIAEEE PAFESEEALV SAHCSAPLLQ DIRNDSVITL IDTETDGGKD  300
DSKFSNSTSY CDSKTAYSSM CPTGRISFKL YDWNPAEFPR RLRHQIFEWL ANMPVELEGY  360
IRPGCTILTV FISMPNNMWA KLSENPMTYM HDFVFRPGRM LYGRGFMTIY LNNMIFRTRK  420
DGTSMVKIDA EVQVPRLHFV YPACFEAGKP MEFVACGSNL LQPKFRFLVS FAGRYLPCYY  480
RVASSLVQSK DDSPSCDHQL YKIYIPQTEP DLFGPAFIEV ENQSGLSNFI PVLIGDKEVC  540
SEMKSIQQRF DASVFQERSI FSTTGSLVEA CEMSTSQHRA YSEFLLDIAW LLREPKLENF  600
KETMASSQIL RFNRLLSFLI QNESTIILKK ILQNLKIVVE MIGFDGTNDS GVRLLQKYMN  660
HARDILSDEL QKGEIPVFRS EYIEQERNQV SQSSFDNNEL PIVPKISQVR TQF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul5_A	3e-40	145	222	5	82	squamosa promoter binding protein-like 7
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	206	218	RRKLERHNIRRRR

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed constitutively during plant development. {ECO:0000269\|PubMed:10524240}.
Uniprot	TISSUE SPECIFICITY: Expressed in roots rosette leaves, cauline leaves, stems, flowers and siliques. {ECO:0000269\|PubMed:24335506}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that participates in reprogramming global gene expression during copper deficiency in order to improve the metal uptake and prioritize its distribution to copper proteins of major importance (Probable). Binds directly to 5'-GTAC-3' motifs in the microRNA (miRNA) promoter of the stress-responsive miRNAs miR398b and miR398c to activate their transcription. During copper deficiency, activates the copper transporters COPT1 and COPT2, and the copper chaperone CCH, directly or indirectly via miRNAs. Required for the expression of the miRNAs miR397, miR408 and miR857 (PubMed:19122104). Acts coordinately with HY5 to regulate miR408 and its target genes in response to changes in light and copper conditions (PubMed:25516599). Activates miR857 and its target genes in response to low copper conditions (PubMed:26511915). Involved in cadmium stress response by regulating miR397a, miR398b, miR398c and miR857 (PubMed:27352843). Required for iron homeostasis during copper deficiency (PubMed:22374396). {ECO:0000269\|PubMed:19122104, ECO:0000269\|PubMed:22374396, ECO:0000269\|PubMed:25516599, ECO:0000269\|PubMed:26511915, ECO:0000269\|PubMed:27352843}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ622315	0.0	KJ622315.1 Gossypium hirsutum SQUAMOSA promoter binding-like transcription factor (SPL7) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012455434.1	0.0	PREDICTED: squamosa promoter-binding-like protein 7 isoform X2
Swissprot	Q8S9G8	0.0	SPL7_ARATH; Squamosa promoter-binding-like protein 7
TrEMBL	A0A0D2UUY8	0.0	A0A0D2UUY8_GOSRA; Uncharacterized protein
STRING	Gorai.011G183800.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18830.2	0.0	squamosa promoter binding protein-like 7

Link Out ? help Back to Top
Phytozome	Gorai.011G183800.2

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Zhang H, et al. MicroRNA408 is critical for the HY5-SPL7 gene network that mediates the coordinated response to light and copper. Plant Cell, 2014. 26(12): p. 4933-53 [PMID:25516599] Zhao Y, et al. MicroRNA857 Is Involved in the Regulation of Secondary Growth of Vascular Tissues in Arabidopsis. Plant Physiol., 2015. 169(4): p. 2539-52 [PMID:26511915] Perea-García A, et al. Modulation of copper deficiency responses by diurnal and circadian rhythms in Arabidopsis thaliana. J. Exp. Bot., 2016. 67(1): p. 391-403 [PMID:26516126] Gielen H,Remans T,Vangronsveld J,Cuypers A Toxicity responses of Cu and Cd: the involvement of miRNAs and the transcription factor SPL7. BMC Plant Biol., 2016. 16(1): p. 145 [PMID:27352843] Yan J, et al. Arabidopsis Pollen Fertility Requires the Transcription Factors CITF1 and SPL7 That Regulate Copper Delivery to Anthers and Jasmonic Acid Synthesis. Plant Cell, 2017. 29(12): p. 3012-3029 [PMID:29114014] Araki R, et al. SPL7 locally regulates copper-homeostasis-related genes in Arabidopsis. J. Plant Physiol., 2018. [PMID:29635212]