PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.011G183800.1 | ||||||||
Common Name | B456_011G183800, LOC105776980 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | SBP | ||||||||
Protein Properties | Length: 803aa MW: 90766.7 Da PI: 6.6579 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 115 | 4e-36 | 145 | 220 | 1 | 76 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +Cqv+gCe+d+se+k yhrrh++C ++++++vl++g+++r+CqqC++fh ls+fDe+krsCrr+L++hn rrr+k Gorai.011G183800.1 145 RCQVPGCEVDISELKGYHRRHRICLRCANSSTVLIDGETKRYCQQCGKFHLLSNFDEGKRSCRRKLERHNIRRRRK 220 6**********************************************************************99997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 3.2E-28 | 140 | 207 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 29.137 | 143 | 220 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 5.23E-32 | 144 | 222 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.4E-27 | 146 | 220 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 803 aa Download sequence Send to blast |
MHFGDFFYIM DQDPSPATQT PRGDHRSENR KMDFPVTGPE LASSVWDWND LLELTSDDHL 60 PISFDDYGFS PPPLEALAGD PNTVPAPDRV RKRDPRMTCS NFIAGRVPCA CPEIDAQVEK 120 LEEEEAGAPG KKRARTGRVG SGTCRCQVPG CEVDISELKG YHRRHRICLR CANSSTVLID 180 GETKRYCQQC GKFHLLSNFD EGKRSCRRKL ERHNIRRRRK IVGSKTAVNK ESQGAIQSDG 240 IACDGEAGKD DLSGLIAEEE PAFESEEALV SAHCSAPLLQ DIRNDSVITL IDTETDGGKD 300 DSKFSNSTSY CDSKTAYSSM CPTGRISFKL YDWNPAEFPR RLRHQIFEWL ANMPVELEGY 360 IRPGCTILTV FISMPNNMWA KLSENPMTYM HDFVFRPGRM LYGRGFMTIY LNNMIFRTRK 420 DGTSMVKIDA EVQVPRLHFV YPACFEAGKP MEFVACGSNL LQPKFRFLVS FAGRYLPCYY 480 RVASSLVQSK DDSPSCDHQL YKIYIPQTEP DLFGPAFIEV ENQSGLSNFI PVLIGDKEVC 540 SEMKSIQQRF DASVFQERSI FSTTGSLVEA CEMSTSQHRA YSEFLLDIAW LLREPKLENF 600 KETMASSQIL RFNRLLSFLI QNESTIILKK ILQNLKIVVE MIGFDGTNDS GVRLLQKYMN 660 HARDILSDEL QKGEIPVFRS EYIEQERNQV SQSSFDNNEL PIVPKISQVL EERTSKLQTI 720 MAAPTPSETV PLLNKEIIMN VNLSKDYSRK SCGFATMRLR SRPAVLIIAA TAICLGMCAV 780 IFHPNRVGEF AVTMRRCLFD RV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul5_A | 3e-40 | 145 | 222 | 5 | 82 | squamosa promoter binding protein-like 7 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 206 | 218 | RRKLERHNIRRRR |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed constitutively during plant development. {ECO:0000269|PubMed:10524240}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots rosette leaves, cauline leaves, stems, flowers and siliques. {ECO:0000269|PubMed:24335506}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that participates in reprogramming global gene expression during copper deficiency in order to improve the metal uptake and prioritize its distribution to copper proteins of major importance (Probable). Binds directly to 5'-GTAC-3' motifs in the microRNA (miRNA) promoter of the stress-responsive miRNAs miR398b and miR398c to activate their transcription. During copper deficiency, activates the copper transporters COPT1 and COPT2, and the copper chaperone CCH, directly or indirectly via miRNAs. Required for the expression of the miRNAs miR397, miR408 and miR857 (PubMed:19122104). Acts coordinately with HY5 to regulate miR408 and its target genes in response to changes in light and copper conditions (PubMed:25516599). Activates miR857 and its target genes in response to low copper conditions (PubMed:26511915). Involved in cadmium stress response by regulating miR397a, miR398b, miR398c and miR857 (PubMed:27352843). Required for iron homeostasis during copper deficiency (PubMed:22374396). {ECO:0000269|PubMed:19122104, ECO:0000269|PubMed:22374396, ECO:0000269|PubMed:25516599, ECO:0000269|PubMed:26511915, ECO:0000269|PubMed:27352843}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ622315 | 0.0 | KJ622315.1 Gossypium hirsutum SQUAMOSA promoter binding-like transcription factor (SPL7) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012455434.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 7 isoform X2 | ||||
Swissprot | Q8S9G8 | 0.0 | SPL7_ARATH; Squamosa promoter-binding-like protein 7 | ||||
TrEMBL | A0A0D2VNV1 | 0.0 | A0A0D2VNV1_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.011G183800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6358 | 26 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18830.2 | 0.0 | squamosa promoter binding protein-like 7 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.011G183800.1 |
Entrez Gene | 105776980 |