PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G172800.1
Common NameB456_011G172800, LOC105776088
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 155aa    MW: 17887.1 Da    PI: 7.4963
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G172800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.51.1e-201970256
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                        +y+GVr+++ +g++++eIrdp+ +g  +r +lg+f+taeeAa+a+++a+ +l+g+
  Gorai.011G172800.1 19 RYRGVRRRP-WGKYASEIRDPTRQG--ARLWLGTFDTAEEAARAYDRAAFNLRGH 70
                        6********.**********96544..**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.2E-321978IPR001471AP2/ERF domain
SMARTSM003804.4E-361983IPR001471AP2/ERF domain
PROSITE profilePS5103224.751977IPR001471AP2/ERF domain
CDDcd000184.89E-291977No hitNo description
SuperFamilySSF541717.19E-241979IPR016177DNA-binding domain
PfamPF008471.2E-141970IPR001471AP2/ERF domain
PRINTSPR003678.0E-122031IPR001471AP2/ERF domain
PRINTSPR003678.0E-124359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MEDPNKIKEK DEKAKEEVRY RGVRRRPWGK YASEIRDPTR QGARLWLGTF DTAEEAARAY  60
DRAAFNLRGH MAILNFPCEY YAQLMRGSSS SPSPSPYLYP YPSSGNVHKS FDKGSSSSVG  120
QEKQVFEFEY LDDKVLEELL ETEDEKIKKK MMRD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-311613511114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012454013.11e-112PREDICTED: ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC54e-48ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A0D2VNA81e-110A0A0D2VNA8_GOSRA; Uncharacterized protein
STRINGGorai.011G172800.11e-111(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.14e-37ERF family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]