PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.011G170200.1 | ||||||||
Common Name | B456_011G170200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | G2-like | ||||||||
Protein Properties | Length: 219aa MW: 24698.4 Da PI: 7.923 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 35.4 | 2.4e-11 | 138 | 181 | 10 | 50 |
G2-like 10 LHerFve.aveqLGGs..ekAtPktilelmkvkgLtlehvkSHL 50 LHe+ ++ av ++ G+ ++AtPk+++elm+v+gLt+++vkSH Gorai.011G170200.1 138 LHECGLSyAVVSIMGPqsNVATPKQMRELMQVDGLTNDEVKSHS 181 56665533454444541268***********************5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.5E-7 | 149 | 181 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MSPHGTSGSR HINQFPQDTQ TDGYVTARNP YVATQVNISF SNTPVPVIDI PPIQRRLETP 60 YPFLIFVSFF YPHRFLLFFY RYCRSVLISS TFITNPQHCL HRRPISATSD ECCSVQLIDG 120 DGSFNGTGIE SFIKEVKLHE CGLSYAVVSI MGPQSNVATP KQMRELMQVD GLTNDEVKSH 180 SFMSRCLVSV HYFGLKLLVV GICQWKQPCF CSCIPFFH* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC243159 | 2e-77 | AC243159.1 Gossypium hirsutum clone MX146F17-jlq, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012457664.1 | 2e-78 | PREDICTED: uncharacterized protein LOC105778495 | ||||
TrEMBL | A0A0D2RNP6 | 1e-161 | A0A0D2RNP6_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.011G170200.1 | 1e-161 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17996 | 2 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37180.1 | 4e-09 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.011G170200.1 |
Publications ? help Back to Top | |||
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