PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.011G168400.1

Common Name

B456_011G168400, LOC105774934

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HSF

Protein Properties

Length: 358aa MW: 41310.4 Da PI: 5.5002

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.011G168400.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	113.2	1.7e-35	42	134	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 Fl+k+y+i++d++++++isw + +nsf+v+d++ f+ ++Lp++Fkh+nf+SFvRQLn+YgF+kv++++ weF +++F++g+++ Gorai.011G168400.1 42 FLTKTYDIIDDSSTNNIISWGRANNSFIVWDPQAFSMTLLPRFFKHNNFSSFVRQLNTYGFRKVDTDR---------WEFGNEKFHRGQRH 123 9******************999**************************************99.........********** PP XXXXXXXXXXX CS HSF_DNA-bind 93 llekikrkkse 103 ll++i+r+k++ Gorai.011G168400.1 124 LLKNIRRRKTH 134 ******986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	2.3E-56	38	131	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	3.26E-34	38	131	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	1.1E-37	38	131	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	1.5E-18	42	65	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	8.3E-31	42	131	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.5E-18	80	92	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	81	105	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.5E-18	93	105	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence Send to blast
MNPYGRVKEE FPGASSSYPA GMPSMVTAQP MKGLHDAGPP PFLTKTYDII DDSSTNNIIS 60 WGRANNSFIV WDPQAFSMTL LPRFFKHNNF SSFVRQLNTY GFRKVDTDRW EFGNEKFHRG 120 QRHLLKNIRR RKTHQPQASQ SALDHCVEVG RFGLDGEIDR LRRDKQVLMV ELVKLRQQQQ 180 NTRTCLLTVE ERLRKTEMKQ QQMMSFLAKA MQNPSFVQQL IQQNDRSNEL EEAITKKRQR 240 RIDQRSMDVE TSEILGVKIE SEGYGVADFE VTELDKLVMN LQRLTGSQNN IELEHVEESK 300 DHGSKGKSLD EGFWDDLMDG DTHDIDQEIS VLDVEEEDEQ YVDVLVEQLR YLGSSSK*

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence Send to blast

MNPYGRVKEE FPGASSSYPA GMPSMVTAQP MKGLHDAGPP PFLTKTYDII DDSSTNNIIS  60
WGRANNSFIV WDPQAFSMTL LPRFFKHNNF SSFVRQLNTY GFRKVDTDRW EFGNEKFHRG  120
QRHLLKNIRR RKTHQPQASQ SALDHCVEVG RFGLDGEIDR LRRDKQVLMV ELVKLRQQQQ  180
NTRTCLLTVE ERLRKTEMKQ QQMMSFLAKA MQNPSFVQQL IQQNDRSNEL EEAITKKRQR  240
RIDQRSMDVE TSEILGVKIE SEGYGVADFE VTELDKLVMN LQRLTGSQNN IELEHVEESK  300
DHGSKGKSLD EGFWDDLMDG DTHDIDQEIS VLDVEEEDEQ YVDVLVEQLR YLGSSSK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ldu_A	1e-23	37	133	12	122	Heat shock factor protein 1
5d5u_B	1e-23	33	133	17	131	Heat shock factor protein 1
5d5v_B	1e-23	33	133	17	131	Heat shock factor protein 1
5d5v_D	1e-23	33	133	17	131	Heat shock factor protein 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00371	DAP	Transfer from AT3G22830	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KR067417	0.0	KR067417.1 Gossypium hirsutum HSF36 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012452954.1	0.0	PREDICTED: heat stress transcription factor A-6b-like
Refseq	XP_012452955.1	0.0	PREDICTED: heat stress transcription factor A-6b-like
Swissprot	Q9LUH8	1e-129	HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBL	A0A0D2VN26	0.0	A0A0D2VN26_GOSRA; Uncharacterized protein
STRING	Gorai.011G168400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1256	28	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22830.1	1e-117	heat shock transcription factor A6B

Link Out ? help Back to Top
Phytozome	Gorai.011G168400.1
Entrez Gene	105774934

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]