PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.011G142100.2

Common Name

B456_011G142100, LOC105777223

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

FAR1

Protein Properties

Length: 248aa MW: 28641.2 Da PI: 6.5184

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.011G142100.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	84.4	1.9e-26	77	167	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr..traetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fY eYA+++GFs+r+++ ++s +n i+ r+fvCs+eg+r+ ++ +++ r +r++tr gCka++++ ++ gkw+vtk+++eH+H+l Gorai.011G142100.2 77 DFYFEYARRTGFSIRTNRIRHSLKNMAIIGRDFVCSREGFRAAKHAHRK-DRVlpPRPVTREGCKAMIRLAARDGGKWVVTKFVHEHSHKL 166 6***************************************9998832.222459********************************9 PP FAR1 90 a 90 + Gorai.011G142100.2 167 M 167 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.7E-24	77	167	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MAGTAGPHEF SDTDRSSEDE TAVNMAKYEG IRQELLQEQN IMDNEFISSE QANEAFGLGN 60 LEPYTGMTFQ SLDDARDFYF EYARRTGFSI RTNRIRHSLK NMAIIGRDFV CSREGFRAAK 120 HAHRKDRVLP PRPVTREGCK AMIRLAARDG GKWVVTKFVH EHSHKLMDRK FPGELPTVNM 180 LSEEEKDKKI QDLYNELHRE RARSATFQQQ LHMILKDLEE HAEFMSIRVE DIVDSLKRVE 240 LNDSSFN*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX622788	2e-56	JX622788.1 Gossypium hirsutum clone NBRI_GE69666 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012455807.1	0.0	PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3-like
Refseq	XP_012455808.1	0.0	PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3-like
Refseq	XP_012455809.1	0.0	PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3-like
Refseq	XP_012455810.1	0.0	PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3-like
Refseq	XP_012455811.1	0.0	PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3-like
Refseq	XP_016699154.1	0.0	PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3-like
TrEMBL	A0A0D2T7X9	0.0	A0A0D2T7X9_GOSRA; Uncharacterized protein
TrEMBL	A0A1U8KEN1	0.0	A0A1U8KEN1_GOSHI; protein FAR-RED ELONGATED HYPOCOTYL 3-like
TrEMBL	A0A2P5QET0	0.0	A0A2P5QET0_GOSBA; Uncharacterized protein
STRING	Gorai.011G142100.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	4e-42	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Gorai.011G142100.2
Entrez Gene	105777223

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]