PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.011G142000.2 | ||||||||
Common Name | B456_011G142000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | FAR1 | ||||||||
Protein Properties | Length: 174aa MW: 20056.9 Da PI: 9.7793 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 60.6 | 4.7e-19 | 12 | 95 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY++YA++vGF +r+ +s+ks+ +g +r + C + +++ + +++ +++ +C a+++++++k+g+w+++k+ +HnH+l+ Gorai.011G142000.2 12 FYDDYARQVGFLTRVLSSHKSECDGLLFSRGLGCRGYRDGQTKVEL-----QKQDKQQESCSAMIHLRRDKSGRWVIKKFARDHNHPLV 95 9*********************************876666665555.....78888999****************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.9E-16 | 12 | 95 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence Send to blast |
MIFESEGAAK TFYDDYARQV GFLTRVLSSH KSECDGLLFS RGLGCRGYRD GQTKVELQKQ 60 DKQQESCSAM IHLRRDKSGR WVIKKFARDH NHPLVIQLGE SRRTLDEEKD KKIQELTAEL 120 RVKKRLSASY REQLLAVVKE VEDHNYNLSM KVQRTLDNLK KLDAEAKEIL SGR* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012455911.1 | 1e-125 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A0D2USY3 | 1e-123 | A0A0D2USY3_GOSRA; Uncharacterized protein (Fragment) | ||||
TrEMBL | A0A0D2VM38 | 1e-123 | A0A0D2VM38_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.011G142000.1 | 1e-123 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43280.1 | 1e-52 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.011G142000.2 |
Publications ? help Back to Top | |||
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