PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.011G141900.1 | ||||||||
Common Name | B456_011G141900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | FAR1 | ||||||||
Protein Properties | Length: 244aa MW: 28617.2 Da PI: 6.7991 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 86.2 | 5e-27 | 77 | 168 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY+ Y++++GF++r++++++s ++++i+ r+fvCskeg+r+e+ +k +++ ++r+ tr gC+a+l++ ++ gkw+++ +++eHnH l+ Gorai.011G141900.1 77 EFYEMYGRRMGFTIRNNRTRRSLKDNSIIGREFVCSKEGFRAEKYTKkETRVFTSRPATREGCNAMLRIAAKDGGKWVIYGFVKEHNHVLN 167 6*****************************************99888233444699********************************997 PP FAR1 91 p 91 p Gorai.011G141900.1 168 P 168 5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 6.9E-24 | 77 | 168 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
FVMASTSNPE LNTSRNYRQW LTETFDGHEM LDDELSDSNL DGNGNLINPL DQHFPMTMEH 60 REPYIGMEFE SAEDAREFYE MYGRRMGFTI RNNRTRRSLK DNSIIGREFV CSKEGFRAEK 120 YTKKETRVFT SRPATREGCN AMLRIAAKDG GKWVIYGFVK EHNHVLNPSK IPPRRSHRIA 180 FCEDEKDLKI RELSTELHHE KKKSAAYQEQ LQMVLNYIEE HTQRLSLKVN LVSNNLRELE 240 YED* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012455905.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1 | ||||
Refseq | XP_012455907.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1 | ||||
Refseq | XP_012455908.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1 | ||||
Refseq | XP_012455909.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1 | ||||
TrEMBL | A0A0D2T7X3 | 0.0 | A0A0D2T7X3_GOSRA; Uncharacterized protein (Fragment) | ||||
STRING | Gorai.011G141900.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM18086 | 8 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07500.1 | 1e-43 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.011G141900.1 |
Publications ? help Back to Top | |||
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