PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.011G140400.1

Common Name

B456_011G140400, LOC105777698

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 399aa MW: 43657.4 Da PI: 6.8821

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.011G140400.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30	1.2e-09	209	265	5	61
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 kr++r NR +A rs +RK +i+eLe+kv++L++e ++L +l + l++ Gorai.011G140400.1 209 KRAKRVWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLVQRDTNGLTA 265 9****************************************9999877766666655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.3E-14	205	269	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.657	207	270	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.32E-10	209	260	No hit	No description
Gene3D	G3DSA:1.20.5.170	3.3E-8	209	263	No hit	No description
Pfam	PF00170	2.1E-8	209	257	IPR004827	Basic-leucine zipper domain
CDD	cd14703	1.13E-22	210	259	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 399 aa Download sequence Send to blast
MEKDKSPGLL PTSGRFSGFS SSGIAPNNFN PKTETGTFGQ TSENNHFSHD IRKMPDNPPK 60 KLGHRRAHSE ILTLPDDISF DSDTGIVGAA DGPSYSDEAE EDLFSMYLDM DKFNSSSATS 120 TCQVGESSEA AAPVAVPAKS GLSSGENISN GIASSMKPRV RHQHSQSMDG STSIKPEMLM 180 SGSEEVSPAD SKKSMSAANL AELALIDPKR AKRVWANRQS AARSKERKMR YIAELERKVQ 240 TLQTEATSLS AQLTLVQRDT NGLTAENSEL KLRLQAMEQQ VHLQDALNDA MKEEIQHLKM 300 LTVQPMPNGG GMMNFASFGA SQQYYPNNHA KHTLLAAQQF QQLQLHSQKH QHQHQHQFAP 360 NQLHHQQEQT GEMRARGSMP SPNQKDSSSD VNSTASKD*

Sequence ? help Back to Top

Protein Sequence Length: 399 aa Download sequence Send to blast

MEKDKSPGLL PTSGRFSGFS SSGIAPNNFN PKTETGTFGQ TSENNHFSHD IRKMPDNPPK  60
KLGHRRAHSE ILTLPDDISF DSDTGIVGAA DGPSYSDEAE EDLFSMYLDM DKFNSSSATS  120
TCQVGESSEA AAPVAVPAKS GLSSGENISN GIASSMKPRV RHQHSQSMDG STSIKPEMLM  180
SGSEEVSPAD SKKSMSAANL AELALIDPKR AKRVWANRQS AARSKERKMR YIAELERKVQ  240
TLQTEATSLS AQLTLVQRDT NGLTAENSEL KLRLQAMEQQ VHLQDALNDA MKEEIQHLKM  300
LTVQPMPNGG GMMNFASFGA SQQYYPNNHA KHTLLAAQQF QQLQLHSQKH QHQHQHQFAP  360
NQLHHQQEQT GEMRARGSMP SPNQKDSSSD VNSTASKD*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed constitutively at a low level in young seedlings and in roots, stems and leaves of mature plants.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor with an activatory role.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012456530.1	0.0	PREDICTED: probable transcription factor PosF21
Swissprot	Q04088	1e-149	POF21_ARATH; Probable transcription factor PosF21
TrEMBL	A0A0D2T7V0	0.0	A0A0D2T7V0_GOSRA; Uncharacterized protein
STRING	Gorai.011G140400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2445	27	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06070.1	1e-151	bZIP family protein

Link Out ? help Back to Top
Phytozome	Gorai.011G140400.1
Entrez Gene	105777698

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]