PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.011G138700.1

Common Name

B456_011G138700, LOC105776482

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Nin-like

Protein Properties

Length: 952aa MW: 104149 Da PI: 4.943

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.011G138700.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.2	8e-29	588	639	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+++l++l+ yFs+++kdAAk+Lgvc+T+LKriCRq+GI+RWP+Rki+++ Gorai.011G138700.1 588 AEKNVTLSVLQPYFSGSLKDAAKSLGVCPTTLKRICRQLGIPRWPSRKINKV 639 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.427	571	659	IPR003035	RWP-RK domain
Pfam	PF02042	2.4E-26	591	639	IPR003035	RWP-RK domain
SuperFamily	SSF54277	6.21E-23	848	936	No hit	No description
PROSITE profile	PS51745	20.79	852	934	IPR000270	PB1 domain
SMART	SM00666	5.9E-22	852	934	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	1.9E-25	852	934	No hit	No description
Pfam	PF00564	2.9E-17	853	933	IPR000270	PB1 domain
CDD	cd06407	4.27E-32	853	933	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 952 aa Download sequence Send to blast
MKKMESPFSS KEKGNNSSVP PRAQMEGFGG TGSTKNSLSE DPFNFSELMN FDSYAGWFNS 60 PSAADQMFAS FSLSSFPSLP YASFDLLPIT GQSSGTFVEA ADALNGMDGS YNCGDKMVIQ 120 QTGTHIGNPV VPSDAELGSS NLPNTLVSGP TGPSLDEKML RALSLLKESS GGGILAQVWV 180 PIKHGDQYML TTSEQPYLLD QMLSGYREVS RTYIFSAEQK PGSFPGLPGR VFISRVPEWT 240 SDVIHYSKGE YLRFTHAVNY KVRGSIALPI FEPPEMSCCA VLELVTMKEK PNFDSEMKTV 300 SLALQAVNLR TIAPPQPLPQ CLSGSQRAAL AEITDVLRAV CHAHRLPLAL TWIPCYYTEE 360 AVDEILKVGG GEGNRRRDGK RVLCVENTAC YVNERGMQDF VHACMEHYLE EGQGIAGKVL 420 RSNHPFFSTD VKTYDIGDYP LVHHARKCNL NAAVAIRLRS TYTGDDDYIL ELFLPINLKG 480 SSEQQLLLNN LSGTMQRICR SLRTVSDVEI DEGSKIEVQR GKLSDSPSLS ISRRVSETEL 540 SADSEMNSND RVPLHVSTAK SDGKEADGPR EQAMSGPRRQ IEKKRSTAEK NVTLSVLQPY 600 FSGSLKDAAK SLGVCPTTLK RICRQLGIPR WPSRKINKVN RSLRKIQTVL DSVQGGLKFD 660 PTTGEFIAAG TVMQEVDTQK TVVLSNKNLP IRISEPLDLE KSSAASLESC PDEENSVVKL 720 EEDECSFGGN NNMAARSVLV PSTCEEVKQS GVPCIDCNDD SKSVSLDAGS FQAASVRTAD 780 RTCPENADDE INIRMEADDG NAEHNHQPTY SSMTDSSDGS GSISHGSSSS SQSFDEAKNF 840 EMKTICVDSS SKITVKATYK DDTVRFKFEP SAGCFELYEE IARRFKLQTG TFQLKYLDDE 900 EEWVMLVSDS DLQECLEVME FVGTHNVKFQ VRDVPCAIGS SGGSNCFLGG S*

Sequence ? help Back to Top

Protein Sequence Length: 952 aa Download sequence Send to blast

MKKMESPFSS KEKGNNSSVP PRAQMEGFGG TGSTKNSLSE DPFNFSELMN FDSYAGWFNS  60
PSAADQMFAS FSLSSFPSLP YASFDLLPIT GQSSGTFVEA ADALNGMDGS YNCGDKMVIQ  120
QTGTHIGNPV VPSDAELGSS NLPNTLVSGP TGPSLDEKML RALSLLKESS GGGILAQVWV  180
PIKHGDQYML TTSEQPYLLD QMLSGYREVS RTYIFSAEQK PGSFPGLPGR VFISRVPEWT  240
SDVIHYSKGE YLRFTHAVNY KVRGSIALPI FEPPEMSCCA VLELVTMKEK PNFDSEMKTV  300
SLALQAVNLR TIAPPQPLPQ CLSGSQRAAL AEITDVLRAV CHAHRLPLAL TWIPCYYTEE  360
AVDEILKVGG GEGNRRRDGK RVLCVENTAC YVNERGMQDF VHACMEHYLE EGQGIAGKVL  420
RSNHPFFSTD VKTYDIGDYP LVHHARKCNL NAAVAIRLRS TYTGDDDYIL ELFLPINLKG  480
SSEQQLLLNN LSGTMQRICR SLRTVSDVEI DEGSKIEVQR GKLSDSPSLS ISRRVSETEL  540
SADSEMNSND RVPLHVSTAK SDGKEADGPR EQAMSGPRRQ IEKKRSTAEK NVTLSVLQPY  600
FSGSLKDAAK SLGVCPTTLK RICRQLGIPR WPSRKINKVN RSLRKIQTVL DSVQGGLKFD  660
PTTGEFIAAG TVMQEVDTQK TVVLSNKNLP IRISEPLDLE KSSAASLESC PDEENSVVKL  720
EEDECSFGGN NNMAARSVLV PSTCEEVKQS GVPCIDCNDD SKSVSLDAGS FQAASVRTAD  780
RTCPENADDE INIRMEADDG NAEHNHQPTY SSMTDSSDGS GSISHGSSSS SQSFDEAKNF  840
EMKTICVDSS SKITVKATYK DDTVRFKFEP SAGCFELYEE IARRFKLQTG TFQLKYLDDE  900
EEWVMLVSDS DLQECLEVME FVGTHNVKFQ VRDVPCAIGS SGGSNCFLGG S*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012454603.1	0.0	PREDICTED: protein NLP9-like
Refseq	XP_012454604.1	0.0	PREDICTED: protein NLP9-like
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	A0A0D2VLY9	0.0	A0A0D2VLY9_GOSRA; Uncharacterized protein
STRING	Gorai.011G138700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2299	27	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59580.2	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Gorai.011G138700.1
Entrez Gene	105776482

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]