PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.011G135700.5 | ||||||||
Common Name | B456_011G135700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 115aa MW: 12836.7 Da PI: 9.5346 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 18.6 | 3.4e-06 | 48 | 87 | 10 | 54 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + R d++ +++ +L++l+ + +K + a++L +A+eYI+ L Gorai.011G135700.5 48 KDRKDKVGERIVTLQQLVSPY-----GKTDTASVLLQAMEYIQFL 87 78999999**********999.....9****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 8.0E-10 | 37 | 98 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.674 | 38 | 87 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.31E-12 | 39 | 105 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0017 | 44 | 93 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.30E-4 | 48 | 92 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 115 aa Download sequence Send to blast |
MQTLYSCENG IEVRTMMENK RSPCSVDHGS FTPLASKRQK SDLSISTKDR KDKVGERIVT 60 LQQLVSPYGK TDTASVLLQA MEYIQFLHEQ VKVLSAPYLQ TSPTNNMQAR ARAL* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012455223.1 | 3e-76 | PREDICTED: transcription factor bHLH113-like isoform X2 | ||||
Swissprot | Q7XJU2 | 7e-39 | BH153_ARATH; Transcription factor bHLH153 | ||||
TrEMBL | A0A0D2REB2 | 8e-80 | A0A0D2REB2_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.011G135700.1 | 6e-74 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05710.5 | 3e-41 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.011G135700.5 |
Publications ? help Back to Top | |||
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