PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G127500.4
Common NameB456_011G127500, LOC105776293
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 887aa    MW: 97422.6 Da    PI: 6.4637
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G127500.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.31.4e-18290389198
                         EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                         f+kvl+ sd+++ grlvlpk +ae++   ++++e+  l+++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++ 
  Gorai.011G127500.4 290 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLRIQDVKGKEWVFQFRFwpNNNSRMYVLE-GVTPCMQSMQLQAGDTVTFSRMD- 378
                         99**************************555567778***************9989999999***9.********************876. PP

                         SEE..EEEEE- CS
                  B3  88 sefelvvkvfr 98 
                          e++lv+++++
  Gorai.011G127500.4 379 PEGKLVMGFRK 389
                         77777877776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.8E-30282397IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.11E-20287390IPR015300DNA-binding pseudobarrel domain
CDDcd100171.51E-22288389No hitNo description
PROSITE profilePS5086311.011290391IPR003340B3 DNA binding domain
SMARTSM010197.0E-20290390IPR003340B3 DNA binding domain
PfamPF023624.0E-16290389IPR003340B3 DNA binding domain
PROSITE profilePS5105014.559555605IPR011124Zinc finger, CW-type
PfamPF074964.9E-13560602IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010030Biological Processpositive regulation of seed germination
GO:2000034Biological Processregulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 887 aa     Download sequence    Send to blast
MIYIWSRSAY EQSIFCDIFH SKDAGWRECS SCGKRLHCGC IVSRSLLELL DSGGGIICIS  60
CAKKSGLNPM IEDEKPNGFG IVKIDAGQLH SISADNQLIS ISNENLKLMQ LSNNAESIGL  120
RQLLQLHNDD SSRSLLQMKQ EEVLPPAIDI GSTCLSNTNQ ASNGSVQAVK PAIFKANISE  180
TLPQTNLSIS LGSSLGNQNV FPGSVVDEKG KMSSVLQQAS KSLHLLPKPP KPVLAGLEVN  240
AGMVPQIRVA RPPVEGRGRN QLLPRYWPRI TDQELQQISG DSNSTIVPLF EKVLSASDAG  300
RIGRLVLPKA CAEAYFPPIS QPEGLPLRIQ DVKGKEWVFQ FRFWPNNNSR MYVLEGVTPC  360
MQSMQLQAGD TVTFSRMDPE GKLVMGFRKA TNNAVVQENL PSAIPNGTLS SESLFSGVFE  420
NLPIISGYSG LLQSPKGSTD PHLNALSKHL SSTGGDISWN KSGKHEDRIR EGLLLPSMLT  480
PERKRTRNIG SKSKRLLIDS QDALELKLTW EEAQDLLRPP PSIKPSVVTI EDHDFEEYDE  540
PPVFGKRSIF AVRSTGGQEQ WAQCDSCSKW RRLPVDVLLP PKWTCADNNW DQSRSSCSAP  600
EELTPRELEN LLRLNRDFKK RRIAAFTRPT QEHESSSGLD ALANAAILGD NADNSGTTSV  660
ATTTKHPRHR PGCSCIVCIQ PPSGKGKHKP TCTCVVCMTV KRRFKTLTMR KKKRQSEREA  720
EIAQRNQQAW GPSEEAEVDS SAKHVSSSHL NPFENEARSA NELESKSQSS NKLVEANKGQ  780
IDLNCDPDRE DDSQLGPNRT SMTSLVRVAS LPLETYLKEN GLTNLVYEQQ GNSASNAPPQ  840
SMSGTVEGET QENSCFPSAT EEPESKDEEN GETGSDRVDD NNDKDP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A2e-682683972131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1700711KRRFKTLTMRKK
2700713KRRFKTLTMRKKKR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor of gene expression involved in embryonic pathways, such as LEC1, ABI3, and FUS3. Repressor of the sugar-inducible genes involved in the seed maturation program in seedlings. Plays an essential role in regulating the transition from seed maturation to seedling growth. Functionally redundant with VAL1/HSI2. {ECO:0000269|PubMed:17158584, ECO:0000269|PubMed:17267611}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012454318.10.0PREDICTED: B3 domain-containing transcription repressor VAL2-like isoform X2
SwissprotQ5CCK40.0VAL2_ARATH; B3 domain-containing transcription repressor VAL2
TrEMBLA0A0D2T7C50.0A0A0D2T7C5_GOSRA; Uncharacterized protein
STRINGGorai.011G127500.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.10.0HSI2-like 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Jia H,McCarty DR,Suzuki M
    Distinct roles of LAFL network genes in promoting the embryonic seedling fate in the absence of VAL repression.
    Plant Physiol., 2013. 163(3): p. 1293-305
    [PMID:24043445]
  3. Chhun T, et al.
    HSI2 Repressor Recruits MED13 and HDA6 to Down-Regulate Seed Maturation Gene Expression Directly During Arabidopsis Early Seedling Growth.
    Plant Cell Physiol., 2016. 57(8): p. 1689-706
    [PMID:27335347]
  4. Yuan W, et al.
    A cis cold memory element and a trans epigenome reader mediate Polycomb silencing of FLC by vernalization in Arabidopsis.
    Nat. Genet., 2016. 48(12): p. 1527-1534
    [PMID:27819666]
  5. Li C,Cui Y
    A DNA element that remembers winter.
    Nat. Genet., 2016. 48(12): p. 1451-1452
    [PMID:27898079]