PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.011G127500.4 | ||||||||
Common Name | B456_011G127500, LOC105776293 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | B3 | ||||||||
Protein Properties | Length: 887aa MW: 97422.6 Da PI: 6.4637 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 58.3 | 1.4e-18 | 290 | 389 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+kvl+ sd+++ grlvlpk +ae++ ++++e+ l+++d +g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++++ Gorai.011G127500.4 290 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLRIQDVKGKEWVFQFRFwpNNNSRMYVLE-GVTPCMQSMQLQAGDTVTFSRMD- 378 99**************************555567778***************9989999999***9.********************876. PP SEE..EEEEE- CS B3 88 sefelvvkvfr 98 e++lv+++++ Gorai.011G127500.4 379 PEGKLVMGFRK 389 77777877776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.8E-30 | 282 | 397 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 8.11E-20 | 287 | 390 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.51E-22 | 288 | 389 | No hit | No description |
PROSITE profile | PS50863 | 11.011 | 290 | 391 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.0E-20 | 290 | 390 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.0E-16 | 290 | 389 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 14.559 | 555 | 605 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 4.9E-13 | 560 | 602 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010030 | Biological Process | positive regulation of seed germination | ||||
GO:2000034 | Biological Process | regulation of seed maturation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 887 aa Download sequence Send to blast |
MIYIWSRSAY EQSIFCDIFH SKDAGWRECS SCGKRLHCGC IVSRSLLELL DSGGGIICIS 60 CAKKSGLNPM IEDEKPNGFG IVKIDAGQLH SISADNQLIS ISNENLKLMQ LSNNAESIGL 120 RQLLQLHNDD SSRSLLQMKQ EEVLPPAIDI GSTCLSNTNQ ASNGSVQAVK PAIFKANISE 180 TLPQTNLSIS LGSSLGNQNV FPGSVVDEKG KMSSVLQQAS KSLHLLPKPP KPVLAGLEVN 240 AGMVPQIRVA RPPVEGRGRN QLLPRYWPRI TDQELQQISG DSNSTIVPLF EKVLSASDAG 300 RIGRLVLPKA CAEAYFPPIS QPEGLPLRIQ DVKGKEWVFQ FRFWPNNNSR MYVLEGVTPC 360 MQSMQLQAGD TVTFSRMDPE GKLVMGFRKA TNNAVVQENL PSAIPNGTLS SESLFSGVFE 420 NLPIISGYSG LLQSPKGSTD PHLNALSKHL SSTGGDISWN KSGKHEDRIR EGLLLPSMLT 480 PERKRTRNIG SKSKRLLIDS QDALELKLTW EEAQDLLRPP PSIKPSVVTI EDHDFEEYDE 540 PPVFGKRSIF AVRSTGGQEQ WAQCDSCSKW RRLPVDVLLP PKWTCADNNW DQSRSSCSAP 600 EELTPRELEN LLRLNRDFKK RRIAAFTRPT QEHESSSGLD ALANAAILGD NADNSGTTSV 660 ATTTKHPRHR PGCSCIVCIQ PPSGKGKHKP TCTCVVCMTV KRRFKTLTMR KKKRQSEREA 720 EIAQRNQQAW GPSEEAEVDS SAKHVSSSHL NPFENEARSA NELESKSQSS NKLVEANKGQ 780 IDLNCDPDRE DDSQLGPNRT SMTSLVRVAS LPLETYLKEN GLTNLVYEQQ GNSASNAPPQ 840 SMSGTVEGET QENSCFPSAT EEPESKDEEN GETGSDRVDD NNDKDP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 2e-68 | 268 | 397 | 2 | 131 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 700 | 711 | KRRFKTLTMRKK |
2 | 700 | 713 | KRRFKTLTMRKKKR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor of gene expression involved in embryonic pathways, such as LEC1, ABI3, and FUS3. Repressor of the sugar-inducible genes involved in the seed maturation program in seedlings. Plays an essential role in regulating the transition from seed maturation to seedling growth. Functionally redundant with VAL1/HSI2. {ECO:0000269|PubMed:17158584, ECO:0000269|PubMed:17267611}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012454318.1 | 0.0 | PREDICTED: B3 domain-containing transcription repressor VAL2-like isoform X2 | ||||
Swissprot | Q5CCK4 | 0.0 | VAL2_ARATH; B3 domain-containing transcription repressor VAL2 | ||||
TrEMBL | A0A0D2T7C5 | 0.0 | A0A0D2T7C5_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.011G127500.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32010.1 | 0.0 | HSI2-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.011G127500.4 |
Entrez Gene | 105776293 |
Publications ? help Back to Top | |||
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