PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.011G127500.3 | ||||||||
Common Name | B456_011G127500, LOC105776293 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | B3 | ||||||||
Protein Properties | Length: 882aa MW: 96790 Da PI: 6.8718 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 58.3 | 1.3e-18 | 321 | 420 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+kvl+ sd+++ grlvlpk +ae++ ++++e+ l+++d +g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++++ Gorai.011G127500.3 321 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLRIQDVKGKEWVFQFRFwpNNNSRMYVLE-GVTPCMQSMQLQAGDTVTFSRMD- 409 99**************************555567778***************9989999999***9.********************876. PP SEE..EEEEE- CS B3 88 sefelvvkvfr 98 e++lv+++++ Gorai.011G127500.3 410 PEGKLVMGFRK 420 77777877776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.50.10 | 3.0E-4 | 3 | 42 | IPR013088 | Zinc finger, NHR/GATA-type |
Gene3D | G3DSA:2.40.330.10 | 3.2E-30 | 313 | 427 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.98E-20 | 318 | 421 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.49E-22 | 319 | 420 | No hit | No description |
Pfam | PF02362 | 4.0E-16 | 321 | 420 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.0E-20 | 321 | 421 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.011 | 321 | 422 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 14.559 | 550 | 600 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 4.9E-13 | 555 | 597 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010030 | Biological Process | positive regulation of seed germination | ||||
GO:2000034 | Biological Process | regulation of seed maturation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 882 aa Download sequence Send to blast |
MASKSCMNGL CGATTSIEWR KGWALRSGDF ANLCDKCGSA YEQSIFCDIF HSKDAGWREC 60 SSCGKRLHCG CIVSRSLLEL LDSGGGIICI SCAKKSGLNP MIEDEKPNGF GIVKIDAGQL 120 HSISADNQLI SISNENLKLM QLSNNAESIG LRQLLQLHND DSSRSLLQMK QEEVLPPAID 180 IGSTCLSNTN QASNGSVQAV KPAIFKANIS ETLPQTNLSI SLGSSLGNQN VFPGSVVDEK 240 GKMSSVLQQA SKSLHLLPKP PKPVLAGLEV NAGMVPQIRV ARPPVEGRGR NQLLPRYWPR 300 ITDQELQQIS GDSNSTIVPL FEKVLSASDA GRIGRLVLPK ACAEAYFPPI SQPEGLPLRI 360 QDVKGKEWVF QFRFWPNNNS RMYVLEGVTP CMQSMQLQAG DTVTFSRMDP EGKLVMGFRK 420 ATNNAVVQSP KGSTDPHLNA LSKHLSSTGG DISWNKSGKH EDRIREGLLL PSMLTPERKR 480 TRNIGSKSKR LLIDSQDALE LKLTWEEAQD LLRPPPSIKP SVVTIEDHDF EEYDEPPVFG 540 KRSIFAVRST GGQEQWAQCD SCSKWRRLPV DVLLPPKWTC ADNNWDQSRS SCSAPEELTP 600 RELENLLRLN RDFKKRRIAA FTRPTQEHES SSGLDALANA AILGDNADNS GTTSVATTTK 660 HPRHRPGCSC IVCIQPPSGK GKHKPTCTCV VCMTVKRRFK TLTMRKKKRQ SEREAEIAQR 720 NQQAWGPSEE AEVDSSAKHV SSSHLNPFEN EARSANELES KSQSSNKLVE ANKGQIDLNC 780 DPDREDDSQL GPNRTSMTSL VRVASLPLET YLKENGLTNL VYEQQGNSAS NAPPQSMSGT 840 VEGETQENSC FPSATEEPES KDEENGETGS DRVDDNNDKD P* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 2e-68 | 299 | 428 | 2 | 131 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 695 | 706 | KRRFKTLTMRKK |
2 | 695 | 708 | KRRFKTLTMRKKKR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor of gene expression involved in embryonic pathways, such as LEC1, ABI3, and FUS3. Repressor of the sugar-inducible genes involved in the seed maturation program in seedlings. Plays an essential role in regulating the transition from seed maturation to seedling growth. Functionally redundant with VAL1/HSI2. {ECO:0000269|PubMed:17158584, ECO:0000269|PubMed:17267611}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012454319.1 | 0.0 | PREDICTED: B3 domain-containing transcription repressor VAL2-like isoform X3 | ||||
Swissprot | Q5CCK4 | 0.0 | VAL2_ARATH; B3 domain-containing transcription repressor VAL2 | ||||
TrEMBL | A0A0D2RLL8 | 0.0 | A0A0D2RLL8_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.011G127500.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32010.1 | 0.0 | HSI2-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.011G127500.3 |
Entrez Gene | 105776293 |
Publications ? help Back to Top | |||
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