PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.011G127500.2 | ||||||||
Common Name | B456_011G127500, LOC105776293 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | B3 | ||||||||
Protein Properties | Length: 918aa MW: 100524 Da PI: 6.5601 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 58.3 | 1.4e-18 | 321 | 420 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+kvl+ sd+++ grlvlpk +ae++ ++++e+ l+++d +g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++++ Gorai.011G127500.2 321 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLRIQDVKGKEWVFQFRFwpNNNSRMYVLE-GVTPCMQSMQLQAGDTVTFSRMD- 409 99**************************555567778***************9989999999***9.********************876. PP SEE..EEEEE- CS B3 88 sefelvvkvfr 98 e++lv+++++ Gorai.011G127500.2 410 PEGKLVMGFRK 420 77777877776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.50.10 | 3.1E-4 | 3 | 42 | IPR013088 | Zinc finger, NHR/GATA-type |
Gene3D | G3DSA:2.40.330.10 | 2.9E-30 | 313 | 428 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 8.5E-20 | 318 | 421 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.61E-22 | 319 | 420 | No hit | No description |
SMART | SM01019 | 7.0E-20 | 321 | 421 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.011 | 321 | 422 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.2E-16 | 321 | 420 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 14.559 | 586 | 636 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 5.1E-13 | 591 | 633 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010030 | Biological Process | positive regulation of seed germination | ||||
GO:2000034 | Biological Process | regulation of seed maturation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 918 aa Download sequence Send to blast |
MASKSCMNGL CGATTSIEWR KGWALRSGDF ANLCDKCGSA YEQSIFCDIF HSKDAGWREC 60 SSCGKRLHCG CIVSRSLLEL LDSGGGIICI SCAKKSGLNP MIEDEKPNGF GIVKIDAGQL 120 HSISADNQLI SISNENLKLM QLSNNAESIG LRQLLQLHND DSSRSLLQMK QEEVLPPAID 180 IGSTCLSNTN QASNGSVQAV KPAIFKANIS ETLPQTNLSI SLGSSLGNQN VFPGSVVDEK 240 GKMSSVLQQA SKSLHLLPKP PKPVLAGLEV NAGMVPQIRV ARPPVEGRGR NQLLPRYWPR 300 ITDQELQQIS GDSNSTIVPL FEKVLSASDA GRIGRLVLPK ACAEAYFPPI SQPEGLPLRI 360 QDVKGKEWVF QFRFWPNNNS RMYVLEGVTP CMQSMQLQAG DTVTFSRMDP EGKLVMGFRK 420 ATNNAVVQEN LPSAIPNGTL SSESLFSGVF ENLPIISGYS GLLQSPKGST DPHLNALSKH 480 LSSTGGDISW NKSGKHEDRI REGLLLPSML TPERKRTRNI GSKSKRLLID SQDALELKLT 540 WEEAQDLLRP PPSIKPSVVT IEDHDFEEYD EPPVFGKRSI FAVRSTGGQE QWAQCDSCSK 600 WRRLPVDVLL PPKWTCADNN WDQSRSSCSA PEELTPRELE NLLRLNRDFK KRRIAAFTRP 660 TQEHESSSGL DALANAAILG DNADNSGTTS VATTTKHPRH RPGCSCIVCI QPPSGKGKHK 720 PTCTCVVCMT VKRRFKTLTM RKKKRQSERE AEIAQRNQQA WGPSEEAEVD SSAKHVSSSH 780 LNPFENEARS ANELESKSQS SNKLVEANKG QIDLNCDPDR EDDSQLGPNR TSMTSLVRVA 840 SLPLETYLKE NGLTNLVYEQ QGNSASNAPP QSMSGTVEGE TQENSCFPSA TEEPESKDEE 900 NGETGSDRVD DNNDKDP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 3e-68 | 299 | 428 | 2 | 131 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 731 | 742 | KRRFKTLTMRKK |
2 | 731 | 744 | KRRFKTLTMRKKKR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor of gene expression involved in embryonic pathways, such as LEC1, ABI3, and FUS3. Repressor of the sugar-inducible genes involved in the seed maturation program in seedlings. Plays an essential role in regulating the transition from seed maturation to seedling growth. Functionally redundant with VAL1/HSI2. {ECO:0000269|PubMed:17158584, ECO:0000269|PubMed:17267611}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012454315.1 | 0.0 | PREDICTED: B3 domain-containing transcription repressor VAL2-like isoform X1 | ||||
Refseq | XP_012454316.1 | 0.0 | PREDICTED: B3 domain-containing transcription repressor VAL2-like isoform X1 | ||||
Refseq | XP_012454317.1 | 0.0 | PREDICTED: B3 domain-containing transcription repressor VAL2-like isoform X1 | ||||
Swissprot | Q5CCK4 | 0.0 | VAL2_ARATH; B3 domain-containing transcription repressor VAL2 | ||||
TrEMBL | A0A0D2UTD2 | 0.0 | A0A0D2UTD2_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.011G127500.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32010.1 | 0.0 | HSI2-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.011G127500.2 |
Entrez Gene | 105776293 |
Publications ? help Back to Top | |||
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