PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.011G114200.1

Common Name

B456_011G114200

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

WRKY

Protein Properties

Length: 147aa MW: 16630.6 Da PI: 9.0117

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.011G114200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95	5.4e-30	72	130	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +dDgy+WrKYG+K+vk+s++pr+YY+C+s gC+vkk++er+++d ++v++tYeg+Hnh Gorai.011G114200.1 72 MDDGYKWRKYGKKPVKNSPNPRNYYKCSSGGCNVKKRIERDRDDHSYVITTYEGSHNHY 130 69********************************************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.8E-32	58	131	IPR003657	WRKY domain
SuperFamily	SSF118290	1.96E-27	64	132	IPR003657	WRKY domain
PROSITE profile	PS50811	31.307	67	132	IPR003657	WRKY domain
SMART	SM00774	4.7E-32	72	131	IPR003657	WRKY domain
Pfam	PF03106	3.0E-23	73	129	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 147 aa Download sequence Send to blast
MSDYLMLDGG VFEEDSSSQS IASSEKGLGG GNEISGATSK TPIIKCKTEA REKKLEQRHR 60 VAFITKSEIE VMDDGYKWRK YGKKPVKNSP NPRNYYKCSS GGCNVKKRIE RDRDDHSYVI 120 TTYEGSHNHY SPFTVYYNQM PPNAWT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	5e-24	65	132	10	77	Probable WRKY transcription factor 4
2lex_A	5e-24	65	132	10	77	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Involved in defense responses. May act as positive regulator of salicylic acid (SA)-mediated signaling and negative regulator of jasmonic acid (JA)-mediated signaling (PubMed:21030507). {ECO:0000250, ECO:0000269\|PubMed:21030507}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF669839	0.0	KF669839.1 Gossypium hirsutum WRKY transcription factor 115 (WRKY115) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012453269.1	1e-105	PREDICTED: uncharacterized protein LOC105775290
Refseq	XP_016700548.1	1e-106	PREDICTED: probable WRKY transcription factor 51
Swissprot	Q93WU9	1e-42	WRK51_ARATH; Probable WRKY transcription factor 51
TrEMBL	A0A0D2VL90	1e-105	A0A0D2VL90_GOSRA; Uncharacterized protein
STRING	Gorai.011G114200.1	1e-106	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5711	27	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64810.1	8e-42	WRKY DNA-binding protein 51

Link Out ? help Back to Top
Phytozome	Gorai.011G114200.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Yan C, et al. Injury Activates Ca2+/Calmodulin-Dependent Phosphorylation of JAV1-JAZ8-WRKY51 Complex for Jasmonate Biosynthesis. Mol. Cell, 2018. 70(1): p. 136-149.e7 [PMID:29625034]